Aquimarina sp. AD1: D1815_03095
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Entry
D1815_03095 CDS
T05625
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aqa
Aquimarina sp. AD1
Pathway
aqa03030
DNA replication
aqa03410
Base excision repair
aqa03420
Nucleotide excision repair
aqa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1815_03095 (ligA)
03410 Base excision repair
D1815_03095 (ligA)
03420 Nucleotide excision repair
D1815_03095 (ligA)
03430 Mismatch repair
D1815_03095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqa03032
]
D1815_03095 (ligA)
03400 DNA repair and recombination proteins [BR:
aqa03400
]
D1815_03095 (ligA)
Enzymes [BR:
aqa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1815_03095 (ligA)
DNA replication proteins [BR:
aqa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1815_03095 (ligA)
DNA repair and recombination proteins [BR:
aqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1815_03095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1815_03095 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1815_03095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1815_03095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Mig-14
5_3_exonuc
Bac_small_YrzI
Zn_ribbon_Top1
Auto_anti-p27
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AXT54781
LinkDB
All DBs
Position
659377..661371
Genome browser
AA seq
664 aa
AA seq
DB search
MSIEQQINKIREELRQHNYNYYVLDAATISDYEFDMKLKELQEMEEKHPEFYDPNSPTLR
VGGEVTKNFNTVVHEQRMYSLDNSYSKEDLLDWETRIKKLVDGDVSYTCELKYDGASISL
TYENGELIRAVTRGDGIQGDDVTTNVKTIKSVPLKLKGDYPVKFDIRGEIVLPYEGFAKM
NQERVAAGEEPYANPRNTASGSLKLQDSSETAKRPLDCLLYNLAGDRLGISSQYESLEKA
RQWGFKVPQESRLVNSIDEVLEFVNLWDQKRRDLPYETDGVVIKVNNLQQQEELGFTSKA
PRWAMAYKFKAEQAVTKLNEITYQVGRTGAITPVANLEPVQLAGTTVRRASLHNADQIQK
LDIRENDTVFVEKGGEIIPKIVSVDFTKRDHNSIPTQYISSCPECGTDLIRKEGEAQHYC
PNIYGCPPQIVGRIQHYISRKALDIEGLGGETVALLVKEGLITNYADLYELTKEQVIPLE
RMAEKSADNLIEGILKSKEIPFERVLFGLGIRYVGETVAKKLAKHYKTIDAIIAATEEEL
VNVDEIGIKIAQSVREFFNSESNKTLVEKLLSHGVQLQISADKLANQTETLKGQTFVVSG
VFEKVSRNELKKLIEDNGGKVSSSISSKTTYVVAGANMGPSKLEKANKLGIVIISEDDFL
NLIE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagagcagcaaatcaataaaataagagaagagttaaggcaacataattataat
tattatgtgcttgatgcagcaacgataagtgattatgaatttgatatgaagctgaaagag
cttcaggagatggaagaaaaacatcctgagttttatgatccaaattcaccaacattaagg
gttggtggagaagttactaagaattttaatacagttgttcatgaacaacggatgtattcg
ttagataattcttattctaaggaagatttgttggattgggaaactagaattaagaagttg
gtggatggagatgtaagttatacgtgtgagctaaagtatgatggtgcttcgattagtttg
acttatgaaaatggagaattaattcgggcagtgactagaggtgatgggatccaaggagat
gatgttaccacaaatgtaaaaacgattaaatcggttcctttaaaacttaaaggtgattat
ccggttaaatttgatatacggggagaaatcgtattaccttatgagggttttgcaaagatg
aatcaagaacgtgtcgctgcgggagaagagccttatgcgaacccaagaaatacagcttca
ggaagtttaaaattacaagatagtagtgagaccgctaaacgtcctttagattgtttattg
tataatcttgctggagatcgattaggtatttcttcacaatatgaaagtcttgaaaaagct
aggcaatgggggtttaaggtgcctcaagaatctcgtttagttaattctatagatgaggtt
ttagagtttgttaatctttgggatcagaaaagaagagatttaccttatgagactgatggc
gttgtaattaaagtaaataatctacaacaacaagaagagttaggatttacgtctaaagct
ccgagatgggctatggcgtataagtttaaagcagaacaggcggttactaaacttaatgag
attacatatcaagtaggtagaacaggagcaattacacctgtggctaacttagaacctgtt
caattagcaggaacaactgtaagaagagcttcattgcataatgcagatcaaattcagaaa
ttagatatcagagaaaatgatactgtttttgtagaaaagggaggtgagattataccaaag
attgtaagtgttgattttactaaaagagaccataattctattcctactcagtatatatca
tcttgtccagaatgtggtacggatttgataaggaaagaaggagaagcacagcattattgt
cctaatatttatggttgtcctccacagattgttggaagaatacagcattatatttctcgt
aaggctcttgatatagaaggtttaggaggtgagacagttgctcttttggtaaaagaaggt
ctgattactaattatgcggatttatatgaattaacaaaagaacaagtcattcctttggag
agaatggctgagaaaagtgcggataatttaatagaaggaattttaaaatctaaagaaatt
ccatttgagagagtcttgtttggtttggggattagatatgttggagaaaccgtagcaaaa
aagttggctaaacattataaaactatagatgcaattatagctgctactgaggaagaattg
gttaatgtagatgaaattggtattaaaattgcccaaagtgtgcgagaattttttaattca
gaatctaataaaacgcttgtagaaaagcttttaagtcacggagtccaattgcaaatttct
gcagataaattggctaatcaaacagagactttaaaaggtcaaacttttgtagtatctgga
gtttttgaaaaagtatctcggaatgaactcaaaaaattaatagaagataacggaggaaaa
gtttctagctcaatttcttcaaagacaacatatgtcgttgctggagcgaatatggggcca
agtaaactagaaaaagcaaacaaactcggaattgtgattataagtgaagatgattttctc
aacttaattgaataa
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