Aquimarina sp. BL5: D1818_04500
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Entry
D1818_04500 CDS
T05615
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aqb
Aquimarina sp. BL5
Pathway
aqb03030
DNA replication
aqb03410
Base excision repair
aqb03420
Nucleotide excision repair
aqb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1818_04500 (ligA)
03410 Base excision repair
D1818_04500 (ligA)
03420 Nucleotide excision repair
D1818_04500 (ligA)
03430 Mismatch repair
D1818_04500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqb03032
]
D1818_04500 (ligA)
03400 DNA repair and recombination proteins [BR:
aqb03400
]
D1818_04500 (ligA)
Enzymes [BR:
aqb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1818_04500 (ligA)
DNA replication proteins [BR:
aqb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1818_04500 (ligA)
DNA repair and recombination proteins [BR:
aqb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1818_04500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1818_04500 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1818_04500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1818_04500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
RNA_ligase
Bac_small_YrzI
HVO_2753_ZBP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AXT50126
UniProt:
A0A3A9VRJ2
LinkDB
All DBs
Position
complement(1008438..1010432)
Genome browser
AA seq
664 aa
AA seq
DB search
MSIEQQINQLREELRQHNYNYYVLDAATISDYEFDMKLKDLQALEEKHPEFYDANSPTLR
VGGEVTKNFNTVVHEQRMYSLDNSYSKEDLLDWETRIKKLVDGDVNYTCELKYDGASISL
TYENGELVRAVTRGDGIQGDDVTTNVKTIKSVPLKLKGDYPPKFDIRGEIVLPYEGFAKM
NQERIAAGEEPYANPRNTASGSLKLQDSSETAKRPLDCLLYNLAGDRLGISSQYESLEKA
REWGFKVPQESRLVTSIDGVLDFVNMWDEKRRELPYETDGVVIKVNDLQQQEELGFTSKA
PRWAMAYKFKAEQVVTKLNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIAK
LDIREGDTVFVEKGGEIIPKIISVDFTKRNKDSVPTQYITSCPECNTELIRKEGEAQHYC
PNVYGCPPQIIGRIQHYISRKALDIEGLGGETVALLVKEGLITNYADLYDLKKEQVIPLE
RMAEKSADNLIEGIAKSKQIPFERVLFGLGIRYVGETVAKKLAKHYKSIESIVSATEEEL
VNVDEIGIKIAQSVREFFDTEYNRELVNRLTQYGIQLQISADKLANQTDTLKGQIFVVSG
VFEKVSRNELKKLIEDNGGKVSSSISSKTSYVVAGANMGPSKLEKASKLEVTIISEDDFL
NLIG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagaacaacagatcaatcaattaagagaggagttaagacaacataactataat
tattatgtattagatgcagctaccataagtgattatgagtttgatatgaaacttaaagat
cttcaagctttagaagaaaagcatcctgagttttatgatgcaaattcacctactttaagg
gtaggaggagaggttactaagaattttaatactgtagttcacgaacagcgtatgtattct
ttggataattcgtattctaaagaagatttattagactgggaaaccagaattaaaaagtta
gtagatggtgatgtaaattatacatgtgaacttaaatacgatggagcatctataagtctt
acttatgaaaacggagaattagttagagctgtaaccagaggagatggaattcagggagat
gatgttactacaaatgtaaaaacaattaaatcggtacctttaaaactgaaaggggattat
cctccaaagtttgatatacgaggagaaattgtgttaccatatgaaggttttgcaaagatg
aatcaggaacgaattgccgccggagaagaaccttacgcaaatcctagaaatacagcttca
ggtagtttaaaacttcaggatagtagtgaaacagctaaacgtcctttggattgtttgttg
tataaccttgccggagatcgattagggatttcttctcagtatgaaagtctggagaaagcg
agagaatgggggtttaaagtaccacaagaatcacgtttagttacatctattgatggagtt
cttgattttgttaatatgtgggatgaaaaaagaagagagttgccttatgagacagatggg
gtagttattaaagttaatgatttacaacaacaagaagagttaggttttacttccaaagcg
ccaagatgggcaatggcttataagtttaaagcagaacaggttgttactaaacttaatgaa
attacgtatcaggtcggtagaaccggagctataacaccggtagcaaatttagagcccgtg
caattagcaggaacaacagtaaaaagagcttcattgcacaatgcagatcagattgctaag
cttgatataagagaaggggataccgtttttgtagaaaaaggaggagagattattccaaaa
atcataagtgttgattttactaaaagaaataaagattctgttcctactcaatacataaca
tcctgtcctgaatgtaatactgaattaataagaaaagaaggcgaagctcaacattattgc
cctaatgtttatggttgtcctcctcagattattggtagaatacaacattatatttcccgt
aaagctttggatatagaaggtttaggaggagaaactgttgctttattggtgaaagaaggt
ttgattacgaattatgcagatttgtatgatctaaagaaggaacaagtgattccgctggag
agaatggcagaaaaaagcgcggataatttaatagaaggaatagctaagtctaagcaaatt
cctttcgaaagagttttatttggcttgggtatcagatatgtaggagaaactgtagcaaag
aaactagccaaacattataaatctatcgaatctattgtttctgctacagaagaagaactg
gtgaatgtggatgaaatagggattaaaatagcacaaagtgttcgagaattttttgataca
gaatataatagagagttagtaaatagacttacgcaatatggaattcaattacaaatttct
gcagataaacttgctaatcaaacagatacattaaaaggtcaaatctttgtagtttctggt
gtttttgaaaaagtatctcgtaatgaacttaagaaattgatagaagataatggcggcaaa
gtatctagttcaatttcttctaaaacttcatacgtcgtagctggagctaatatgggacct
agtaaattagaaaaagcaagcaaattggaagttacaattataagtgaagatgattttctt
aacttgattggttaa
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