Aquabacter sp. L1I39: J5J86_11495
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Entry
J5J86_11495 CDS
T10434
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aqi Aquabacter sp. L1I39
Pathway
aqi03030
DNA replication
aqi03410
Base excision repair
aqi03420
Nucleotide excision repair
aqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5J86_11495 (ligA)
03410 Base excision repair
J5J86_11495 (ligA)
03420 Nucleotide excision repair
J5J86_11495 (ligA)
03430 Mismatch repair
J5J86_11495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqi03032
]
J5J86_11495 (ligA)
03400 DNA repair and recombination proteins [BR:
aqi03400
]
J5J86_11495 (ligA)
Enzymes [BR:
aqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5J86_11495 (ligA)
DNA replication proteins [BR:
aqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5J86_11495 (ligA)
DNA repair and recombination proteins [BR:
aqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5J86_11495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5J86_11495 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5J86_11495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5J86_11495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
AgrD
HALZ
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QTL05859
LinkDB
All DBs
Position
2615045..2617492
Genome browser
AA seq
815 aa
AA seq
DB search
MTDAPSPASSPRHVPVDQLSRADAAIEHGALADEIAGHDRRYYQDDAPQVSDADYDALRR
RYEAIEARFPELRTQESLSERVGAAPSSRFAKIAHTVPMLSLANAFSDEEVEEFVGRVRR
FLDLKDGDEVAFTAEPKIDGLSCSLRYERGELKSAATRGDGSVGEDVTANVRTIAEIPHR
LDAPDVPEIIDIRGEVYMDAADFQALNARQEEAGKPVFANPRNAAAGSLRQLDSNVTASR
PLRFFAYAWGEATSLPAETQKGVVDAFARWGLPTNPLTIIATDTAGLLAHYRSIGAQRAE
LGYDIDGVVYKVNRLDLQRRLGFISRSPRWALAHKFPAQQAVTELLDIEIQVGRTGALTP
VARLKPITVGGVVVANATLHNEDYIRGIGNDGAPIREGRDIRVGDFVIIQRAGDVIPQVV
DVVLDKRPADARPYSFPHTCPACGSHAVREEDGSVRRCTGGLICPAQAVERIRHFVSRNA
LDIEGLGDENVQLLFDAGLLRTPADIFRLHTHAEAVRRAFLEAREERAQKREAETGRARK
KVLSEEERQFLGVDKLFAAIDERRAVPLARFLYGLGIRHVGEVTAKALAKAFRSMDAFIA
ALEKAVPARPGEAWQRLLGVPYVGGSTAQALALASAEVTGVDPEAAVRELFNRAAVNARQ
RVALRTAYGEDAALLAAIIEARQALPGADFLDLAAVPDVGTVAATSLCEFYAEEHNRTLL
TALLAEVKVADAEVAQPPASSPVAGKTVVFTGSLERMTREEAKEMAERLGAKVAGSVSAK
TDLVVAGPGAGSKLEKARSLGVEVITEDEWFARTT
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcccccagccccgcctcctcgccccgccacgtgccggttgatcagctgtct
cgcgcagacgccgccatcgagcatggcgcgctcgcggacgagatcgccgggcatgaccgg
cgctactaccaggacgatgcgccgcaggtgtcggacgccgattatgacgccctgcgccgc
cgctacgaggccatcgaggcgcgctttcccgagctgcgcacgcaggagagcctctccgag
cgggtgggcgcggcgccgtcgagccgcttcgccaagatcgcccacaccgtgcccatgctg
tcgctggccaacgccttctccgacgaggaggtggaggagttcgtcggtcgcgtgcggcgt
ttcctggacctgaaggatggggacgaggtggcgttcaccgccgagcccaagattgacggc
ctgtcctgttcacttcgctatgagcgcggcgaattgaagagcgcagccacgcggggggac
ggttccgtgggcgaggacgtcaccgccaatgtgcgcaccatcgccgagatcccccaccgc
ctcgacgcccccgatgtgcctgagatcatcgacattcgcggcgaggtctatatggacgcc
gccgatttccaggcgctgaatgcgcgccaggaggaggcgggtaagccggtcttcgccaat
ccccgcaatgccgccgccggctcgctgcggcagcttgattccaacgtgaccgccagccgg
ccgctgcgcttcttcgcttatgcctggggcgaggccaccagcctgccggcggagacgcag
aagggcgtggtcgacgccttcgcccgctgggggctgcccaccaatccgctgaccatcatc
gccaccgacacggcgggcctgctggcccattaccgcagcatcggcgcccagcgggccgag
cttggctatgacattgatggcgtcgtctacaaggtgaaccggctggacctgcagcggcgc
ctcggcttcatctcccgctcgccccgctgggccctggcccacaagtttcccgcccagcag
gcggtgaccgagctgctcgacatcgagatccaggtgggtcgcaccggcgcgctgaccccc
gtggcgcggctgaagcccatcacggtgggcggcgtggtggtggccaatgccaccttgcac
aacgaggactatattcgcggcattggcaatgacggcgcgccgatccgtgaggggcgggac
atccgggtcggtgacttcgtcatcatccagcgcgccggcgacgtgatcccgcaagtggtg
gacgtggtgctggacaagcgccccgccgacgcccgcccctacagtttcccccacacctgc
ccggcctgcggctcccatgcggtgcgcgaagaggacggctcggtgcgccgctgcaccggc
gggctcatctgcccggcccaggcggtggagcggatccgccatttcgtctcccgcaacgct
ttggatatcgaggggctgggcgacgagaacgtgcagcttctgttcgatgccggcctcctg
cgcacccccgccgacatcttccgcctgcacacccatgccgaggccgtgcgtcgggccttc
ctggaggcgcgggaggagcgggcgcagaagcgcgaggcggagacggggcgcgcccgcaag
aaggtgctgagcgaggaggagcgccagttcctgggcgtcgacaagctgttcgcggccatc
gacgagcgccgcgccgtgccgctggcccgcttcctttatgggctgggcattcgccatgtg
ggcgaggtgacggccaaggcgctggccaaggctttccgctccatggacgccttcattgcg
gccctggaaaaggctgtgcccgcgcgccccggcgaggcgtggcagcgccttttgggtgtg
ccctatgtgggtggatcgaccgcgcaggcgctggccctggcgagcgcagaggtaaccggc
gtcgatcccgaggcggcggtgcgcgagctgttcaaccgcgccgccgtcaatgcccgccag
cgcgtggccctgcgcaccgcctatggcgaggacgcagcgctcctcgccgccatcattgag
gcgcgccaggccctgccgggggcggatttcctcgatctcgcggcggtgcccgacgtgggc
accgtggcggccacctccttgtgcgaattctatgcggaggagcacaatcgcaccttgctg
accgctctgctggccgaggtgaaggtggccgatgcggaggtggcccagccgccggcttcc
tcgccggtcgccggcaagaccgtggtcttcaccggctcgctggagcgcatgacccgcgag
gaggccaaggagatggccgagcggctcggcgccaaggtggcgggctcggtgtcggccaag
acggatctggtggtggccggccccggtgccggctccaagctggaaaaggcgcgcagcctc
ggggtggaggtcatcaccgaggacgaatggttcgcccgcaccacctga
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