Aquiluna sp. KACHI24: AKACHI_08230
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Entry
AKACHI_08230 CDS
T08897
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aqk
Aquiluna sp. KACHI24
Pathway
aqk03030
DNA replication
aqk03410
Base excision repair
aqk03420
Nucleotide excision repair
aqk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AKACHI_08230 (ligA1)
03410 Base excision repair
AKACHI_08230 (ligA1)
03420 Nucleotide excision repair
AKACHI_08230 (ligA1)
03430 Mismatch repair
AKACHI_08230 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqk03032
]
AKACHI_08230 (ligA1)
03400 DNA repair and recombination proteins [BR:
aqk03400
]
AKACHI_08230 (ligA1)
Enzymes [BR:
aqk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AKACHI_08230 (ligA1)
DNA replication proteins [BR:
aqk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AKACHI_08230 (ligA1)
DNA repair and recombination proteins [BR:
aqk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AKACHI_08230 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AKACHI_08230 (ligA1)
MMR (mismatch excision repair)
DNA ligase
AKACHI_08230 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AKACHI_08230 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
RNA_lig_T4_1
5_3_exonuc
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BDQ00487
LinkDB
All DBs
Position
complement(839555..841633)
Genome browser
AA seq
692 aa
AA seq
DB search
MSEKRIEELRRQIQYYRDAYYQENQSLISDYDYDLLERELKSLELAHGVAEGSPTVLVGG
KASEVFAPVKHLTPMMSLDNAFSEEEFLAWSQRAGGGPFLCEPKIDGLALSITYENGVLV
KAATRGDGETGEDVTQNVLTIQGVPHRLSGSNHPAVIEIRGEVYFPLKAFEKLNADLVAA
GKPPFANPRNSASGSLRQKDPAVTASRPLRMLVHGFGSFEGLNTQSEVYQLLESWGLPTT
KQFAVAQDATSAYKFITQLSQKRHDLEHEIDGVVVKVDELSRQRELGATSRAPRWAIAYK
YPPEQVNTKLLDIKVSIGRTGRATPFAVLAPVKVAGSEVEFATLHNQDQVRAKGILIGDT
VVLRKAGDVIPEILGPVVALRNGSEREFVMPTHCPECSFELAPAQEGDVDLRCPNAESCP
AQLRERIAYIGSRAALDIEALGYVSATALTQPLEPSQPPVQSEADLFDLTLEKLLPIRAY
VLDPDTGLPKHDADGNPKIVDFFRKKDGSPAEVALKLLANLEEAKTRELWKILTSLSIRH
VGPVAARALCNEFGSIEKILQASEDELSQVDGVGPTLASSIKDWYQESWHQRIIERWKAS
GVQLEIPDFAGPVLTDGIFSGMTIVVTGSMQSMTREDAEAKIIAQGGKASSSVSKKTSFV
VAGPGAGSKLAKAEELGIEVIDEATFIARLAS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaagcggatcgaagagcttcgtcgccaaattcagtactaccgcgatgcctac
taccaggagaatcagtcgctgatttcggattatgactacgaccttttggagcgcgaactc
aagagcctggagttagcgcacggcgttgccgagggctcgccaacggttttggttggtggc
aaagccagcgaggtatttgctcccgtgaagcacctaaccccgatgatgtctttagataac
gccttcagcgaggaagagtttctagcttggtcacaacgagccggaggcggcccttttctt
tgtgaaccaaaaattgatggcctggcactttccatcacctacgaaaacggggtcttggtc
aaggctgcaactagaggtgatggtgaaactggtgaggatgtcacacagaatgtgctcacg
atacaaggtgttcctcacagactcagtggctcaaaccacccagcggtaattgaaatcagg
ggagaggtttatttcccactcaaagccttcgaaaagctaaatgccgatttggttgccgcc
ggcaaaccaccgtttgctaacccgagaaactctgcttctggctcccttcgtcaaaaggac
cctgctgttaccgcatccagaccgcttcgcatgttggtgcacggcttcggaagcttcgag
ggtctcaatacccaatccgaggtttatcagctgctggagagttggggtctaccaaccacc
aaacagttcgcagttgcccaggatgcaactagcgcttacaagttcatcactcaactgagt
caaaagcgccacgatcttgagcatgaaatcgacggggtggtggtgaaggtagatgagctc
tcgaggcaacgcgaactcggtgctacttcaagggcgcctaggtgggcgattgcttataaa
tacccacccgagcaggtcaacaccaagcttttggacatcaaggtgtcaattggtagaacc
ggtagggcaaccccgttcgcagtcctggctcctgtaaaggttgctggatcagaggttgag
ttcgcaaccttgcacaatcaagaccaggtcagagctaagggcattttgattggcgacacc
gtcgtactgcgaaaagccggagacgtgatcccagagatattgggtccagtagttgcgctg
cgcaacggctcagagcgggaatttgtaatgccaacccactgtcccgagtgctcatttgag
cttgcccctgcgcaagagggggatgttgatctgaggtgccctaatgccgagagttgtcct
gcacagctcagggagcgcatcgcatacatcggttctcgagcagcgctggacatcgaagct
ctcggttatgtgagcgcgactgcgctcactcagcctctcgagccctcgcagccaccggtg
cagagcgaggcggacctttttgatctgactcttgaaaaactcttaccgattcgggcttat
gtcttggacccagatactggactgccgaagcacgacgccgatggtaatcccaagattgtc
gacttcttccgcaagaaggacggctctccagccgaggtcgcgctcaagctcctggcaaat
ctagaagaagccaaaactcgcgagctttggaagattctcacttcgttatcaattcgccat
gtcggacccgtcgcggctagagcactatgcaatgaatttggatccatcgaaaagattctt
caggccagcgaagatgagctatctcaggttgacggagtgggtccaaccttggcttcgtca
atcaaggattggtatcaagagagctggcaccagcgcatcattgagcgctggaaagcgtct
ggggtgcagctagagattccagacttcgcggggccagttttgaccgacggaatctttagt
ggaatgaccattgttgtcactggcagcatgcagtcaatgactcgcgaggatgccgaagcc
aagatcattgcgcagggcggcaaggccagttcttcggtatcgaagaagacctcatttgtg
gtggctggccccggtgctggctcgaagcttgccaaggctgaggagctcggcatcgaggta
atcgacgaagctacctttatcgcccgactagctagctaa
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