KEGG   Aquitalea sp. USM4: DKK66_04845
Entry
DKK66_04845       CDS       T05865                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aqs  Aquitalea sp. USM4
Pathway
aqs03030  DNA replication
aqs03410  Base excision repair
aqs03420  Nucleotide excision repair
aqs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aqs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DKK66_04845
   03410 Base excision repair
    DKK66_04845
   03420 Nucleotide excision repair
    DKK66_04845
   03430 Mismatch repair
    DKK66_04845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aqs03032]
    DKK66_04845
   03400 DNA repair and recombination proteins [BR:aqs03400]
    DKK66_04845
Enzymes [BR:aqs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DKK66_04845
DNA replication proteins [BR:aqs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DKK66_04845
DNA repair and recombination proteins [BR:aqs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DKK66_04845
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DKK66_04845
   MMR (mismatch excision repair)
    DNA ligase
     DKK66_04845
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DKK66_04845
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT Nlig-Ia PROPPIN
Other DBs
NCBI-ProteinID: QBJ77496
LinkDB
Position
complement(1029334..1031760)
AA seq 808 aa
MSTNDLVARASDLRQLLTRYGHEYYVLDAPSVPDAEYDRLFRELQALEDAHPELKTPDSP
TLRVGGAPLPAFSQVTHRVPMLSLGNAFSDMQAADFDLRHAELIQFDERIRRELGEPVIR
YATEPKFDGLAISLLYRDGVLEQAATRGDGITGENVTENIRTIQSIPLKLAISQPPALLE
VRGEVLMFKRDFERLNAEQVARGDKTFANPRNAAAGSLRQLDSRITAQRRLSFFAYAIAQ
VEGASWPATHAAEMDWLQQLGFPVVAADLRPVVEGAAGLASYYETVMQRRPTLPFEIDGV
VYKVDSRALQEELGFVSRAPRWAIAHKFPAEEAITLVEAIEEQVGRTGAITPVARLQPVF
VGGVTVTNATLHNEDEVRRKDVRVGDSVIVRRAGDVIPEVVAVVLERRPMRPQAGGDLFS
QGEEPQYPAYRLPSHCPVCGSHVVREEGEAVARCSGGLSCRAQRSQAIQHFAGRRMMDID
GLGERYIDKLVEYGYVHSVADLYRLTLDDLLEMKRRADEDEGVTPETVKAGKVASKWAEN
LLEAIAASRTPPLARLLFALGIRHVGESTAKTLADWLGSVALIRRAPAALFAALPDIGGV
VAQSLADFFAEANNEAALDALLQYVSPADEHAPSAKLAERLEPAVLLARLDIPRLTEVRS
QQLAAQVSGLEQLARMERRQLLLLQLPAEVINALADWLDVPAQRSGLQALSALRDEILAQ
LPSETAAAHPLFDGKTFVLTGTLPTLSRDAAKALIEAAGGKVAGSVSKKTHFVVAGAEAG
SKLAKAEELGIAILDEAGLQAMLQQTAD
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgagtaccaacgatcttgttgcccgtgccagcgacttgcgtcaactgctgacgcgctat
ggccacgaatactatgtgctggatgctcccagcgtcccggatgccgaatacgaccggctg
ttccgtgaactgcaagcgctggaagacgcccatccggaactgaaaaccccggactctccc
accttgcgggtgggtggtgcgcccttgccagcgttcagccaggtcacccaccgcgtgccc
atgctgtcgctgggtaatgccttttctgacatgcaggccgctgactttgacctgcgccat
gccgagctgatccagtttgatgagcgtatccgccgcgagctgggcgaaccggtaatccgc
tatgccaccgagcccaagtttgacggtctggccatcagcctgctgtaccgtgacggcgtg
ctggaacaggcagcaacccgcggcgacggcattaccggcgaaaacgtgacggaaaacatc
cgcaccattcagtccattccgctgaaactggccatcagccagccaccggccttgctggag
gtgcgtggtgaagtgctgatgttcaaacgggacttcgaacgcctgaatgccgagcaagtg
gcccgtggcgacaagacctttgccaacccgcgcaatgcggcagcgggcagtctgcgccag
ctggattcccgcatcaccgcccagcgccggctgtcttttttcgcctatgccatcgcccag
gtggaaggtgccagctggcccgccacacatgccgcagaaatggactggctgcagcaactg
ggtttcccggtggtggcagcagacttgcgaccggtggtggaaggtgcggcaggcctggcc
agctattacgaaacggtcatgcagcgccgtccgactttgccgttcgaaattgacggcgtg
gtgtacaaggtggatagccgcgccctgcaagaggagctgggctttgtgtcgcgcgcgccg
cgctgggccattgcccacaaattcccggccgaagaggccattactctggtggaagccatc
gaagagcaagtggggcgcaccggtgccatcaccccggtagcacgcctgcaaccggtgttt
gtcggtggggtgaccgtcaccaacgccaccttgcacaacgaagacgaagtgcggcgcaag
gatgtacgcgttggtgacagcgtcatcgtacgccgggccggtgatgtgattcccgaagtg
gtggcggtggtgctggagcgccgcccgatgcgcccgcaagccggtggcgacctgttcagc
cagggtgaagaaccgcagtacccggcctatcgtctgcccagccattgcccggtatgcggt
agccatgtggtacgcgaggaaggcgaggcggtggctcgctgctcgggcgggctatcctgc
cgggcgcagcgcagccaggccatccagcattttgccggtcgccgcatgatggatatcgat
ggcctgggcgagcgttacatcgacaagctggtggagtatggctatgtgcacagcgtggcg
gacctgtaccgcctgacgctggatgatctgctggaaatgaaacgccgggccgatgaagac
gaaggcgtgacgccagaaacggtgaaagccggcaaggtggccagcaagtgggcagaaaac
ctgctggaggccattgccgccagtcgtaccccgccgctggcgcgtttgctgtttgcgctg
ggcatccgccatgtcggggaatccaccgccaagacgctggccgactggttgggctccgtg
gcgttgatccgccgcgcgcccgccgccctgtttgccgcgctgcccgatattggtggtgtg
gtggcgcaatcgctggccgacttttttgccgaagccaataacgaagcggcactggatgcc
ctgttgcagtatgtcagcccggccgacgagcacgccccgtctgccaaactcgcagagcgg
ctcgaaccggctgtcctgctggcaaggctggatattccacggctgaccgaggtgcgcagc
cagcaactggcggcacaagtcagtgggctggagcaactggcgcgcatggaaagacgtcag
ctcttgctgttgcaattgccggccgaagtcatcaacgcgctggccgactggctggatgtc
ccggcccagcgcagcggcctgcaagcactatctgccttgcgcgacgagattctggcgcaa
ttgccatccgagacggcagctgcccatccgctgtttgacggcaaaacctttgtcctgacc
ggcaccctgcccacactttcacgcgatgcggccaaggcgctgattgaggccgccggtggc
aaggtggcgggcagcgtatcgaaaaagacccatttcgtggtggcgggggccgaagccggc
agcaaactggccaaggccgaagagctgggcattgccattctggatgaagccggcctgcaa
gccatgttgcagcaaaccgcggactga

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