Radiobacillus deserti: FN924_02975
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Entry
FN924_02975 CDS
T06091
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aqt
Radiobacillus deserti
Pathway
aqt03030
DNA replication
aqt03410
Base excision repair
aqt03420
Nucleotide excision repair
aqt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FN924_02975 (ligA)
03410 Base excision repair
FN924_02975 (ligA)
03420 Nucleotide excision repair
FN924_02975 (ligA)
03430 Mismatch repair
FN924_02975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqt03032
]
FN924_02975 (ligA)
03400 DNA repair and recombination proteins [BR:
aqt03400
]
FN924_02975 (ligA)
Enzymes [BR:
aqt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FN924_02975 (ligA)
DNA replication proteins [BR:
aqt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FN924_02975 (ligA)
DNA repair and recombination proteins [BR:
aqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FN924_02975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FN924_02975 (ligA)
MMR (mismatch excision repair)
DNA ligase
FN924_02975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FN924_02975 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
MgtE_N
Motif
Other DBs
NCBI-ProteinID:
QDP39249
UniProt:
A0A516KCX9
LinkDB
All DBs
Position
563121..565124
Genome browser
AA seq
667 aa
AA seq
DB search
MNAEQAKEKLDALKEELNQYNYEYHVLDRPSVSDYEYDTKMKELKEIEEQFPELITADSP
SQRVGGEPLEAFQKVNHVIPMLSLANAFNEQDLRDFDRRVREGVGEEPTYVCELKIDGLA
VSLLYENGQFVRGATRGDGTTGEDITNNLKTIRSIPLKLSKEETMEVRGEAFMPHKSFVK
LNEAKEENGEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYSVGLWEAGELESHSERLE
YLKELGLKTNPEWRKCSSIEDVIQFVEDWMEKRPQLSYEIDGIVIKVDRLDHQEQLGFTA
KSPRWAIAYKFPAEEVITKLVDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
REKDIRIHDTVVIKKAGDIIPEVVRVVTDQRTGKEEPFQMPTECPACGSELIRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVVEQLFEEKLIHTIADLYKLNREDLLKL
ERMGEKSVDNLLNAIEASKQNSLERLLFGLGIRYVGSKAAKTLAEQFEHMDRLKTATAAE
LVAINEIGDKMAESIERYFSEEKVQTLLTELSELGLNMEYKGPKRSEQSTDSVFSGKTIV
LTGKLETLGRSEAKERIEALGGKITGSVSKKTDLVIAGEDAGSKYDKAKDLGIEIWDEQQ
LIQALEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcggaacaagctaaagaaaagttagacgctctaaaagaagagctcaatcaatat
aattatgaataccatgtactcgatcgtccgtctgtttcagattatgaatacgacacgaaa
atgaaagagctaaaggaaatcgaggaacaatttccagaactcattacagctgattcccct
tctcaacgagtaggaggggagcctcttgaagcgttccaaaaggtcaaccatgtcattcct
atgcttagtttagcaaatgcgttcaacgagcaggatcttcgggattttgatcgacgtgtc
agagaaggagttggggaagaaccaacctacgtgtgcgagctgaaaatcgatggattagca
gtgtcgcttttatacgaaaatggccaatttgttcgcggagcaacacgtggcgatggaacg
accggagaggatattacgaataacttgaaaaccattcgtagtattccgttgaagctttca
aaagaagaaacgatggaagtgcgtggagaagcgtttatgccacacaaatcttttgtgaag
ttaaatgaagcgaaggaagagaatggtgaagagccttttgcgaaccctcgtaatgcggca
gcgggctctttaagacagttagatccgaagattgcagcaagccgtaacttagacatcttt
ttatacagcgtgggactttgggaggctggtgaactagaatcccatagtgaacgattagag
tatttaaaggagttaggcttaaaaacgaacccggaatggagaaagtgctcgagcatcgag
gacgtgattcagtttgtagaagattggatggaaaaaagaccacagcttagctacgaaata
gatggaatagttatcaaagtcgatcgcttagatcatcaggaacagttagggtttacagca
aaaagtccgcgctgggcaattgcctataaattcccggcagaagaagtgataaccaaactg
gtagacattgaactaagtgttggccgtactggcgtaatcacacctacagctatccttgaa
ccggttaaagtagcggggacgacggtgcaacgtgcctctttacataatgaggacttaatt
cgggagaaagatatacgcattcatgatacagtggtgattaaaaaagccggtgatataatc
ccagaggtcgttcgcgtcgtaaccgatcagcgaactggtaaggaagaacctttccaaatg
ccaaccgaatgcccggcgtgcggaagtgaactaattcgtctggaagaagaggttgccctt
cgttgtattaatccgaattgccctgctcaattaaaggaaggtctcatccattttgtatct
agaaatgccatgaacatagatggattaggggaaaaggtagtcgagcagctgttcgaagaa
aaattgattcatacgattgctgatttgtacaaactaaaccgggaagatttgttgaagcta
gagcgcatgggagagaaatccgtcgacaacttacttaacgcaattgaggcttcgaaacaa
aattcgttagaaagattattattcggattaggcattcgatacgtaggctccaaagcagct
aaaacgttagccgagcagtttgaacatatggacaggttgaaaacagcaacggctgcagaa
ttagtagcgataaacgaaataggggataaaatggccgaatcgattgaacgctatttctct
gaagagaaagttcaaactcttctaacagagctgtcggagttaggacttaatatggaatac
aaaggaccgaagcgttccgagcaatcaacagactctgttttttctggtaaaacgattgta
ttaacagggaaattagaaacattggggcgttctgaagcaaaagaacgaatagaagcactt
ggagggaaaattacaggaagtgtgagtaagaaaacagaccttgtcattgcaggtgaagat
gcaggatcgaaatatgacaaggcgaaggatttaggaattgagatttgggatgaacaacag
cttatacaagcattagaaggttag
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integrated database retrieval system
