Ascochyta rabiei: EKO05_0007677
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Entry
EKO05_0007677 CDS
T09445
Name
(RefSeq) CCR4-NOT regulatory complex component
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0007677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0007677
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EKO05_0007677
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
SMC_N
PduV-EutP
AAA
AAA_15
AAA_23
AAA_25
DUF3584
SRP54
AAA_28
ORC-CDC6-like
FtsK_SpoIIIE
RsgA_GTPase
AAA_22
Arf
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
62216107
NCBI-ProteinID:
XP_038797179
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All DBs
Position
13:complement(join(297427..298163,298215..298356))
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AA seq
292 aa
AA seq
DB search
MSTQANEQKTAPSIDVKELSYAFPDGSSGLKEVFLNLPPGSRTLLIGANGAGKTTLLRLL
SGKRMAPANTVSIAGVDPFKHGLEGVTYLGLEWVLNPIVRTDIDVVTLLNSVGGQYYAER
CAELVQVLDIDLTWRMHAVSDGERRRVQLAMGLLRPWTILLLDEITVDLDLLSRSNFLAF
LKKETRERPCTIVYATHILDNLATWPTHLVHMSLGKVKKWGSLDDMGVKSDPDSRVLSGN
SQLGELVLNWLQEDLDERGPRNGRNAPRSEGKTYQNLEGKGGYGAEKKVDKE
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactcaagccaacgaacagaagaccgcgccgtcaattgacgtgaaggaactgagc
tatgcattccctgacggttcgagtgggttaaaagaggtctttctgaacctgccaccaggt
agcagaacccttctgatcggagccaacggcgcaggtaagacgacgcttctgcgcctgctc
tccggcaagcgcatggcccccgccaacaccgtctccattgcaggcgtcgaccccttcaaa
catggcctcgagggcgttacttatctcggcctggagtgggttctgaaccccattgtgcgg
acagacatcgacgtggtcaccctcctcaactctgtcggtggccagtactacgcggagcgg
tgcgccgagctagttcaggttctggacatcgacctcacgtggcgcatgcatgccgtgtct
gatggcgagaggagaagagtacagctggccatgggcctgctgcgaccatggaccatcctc
ttgcttgacgagattaccgtcgatctcgacttgctgtcgcgatccaacttcttggcgttc
ttgaaaaaggagaccagggagcggccctgcaccatcgtgtacgcgacacacatcttggat
aacctcgcgacctggcctacacatctggtacacatgtcacttggcaaggtcaagaagtgg
ggtagcctggatgacatgggcgtgaagagcgatcccgattcgagggttctgtctggcaac
agtcagcttggtgagctcgtgctcaactggctacaggaggacctcgacgagagaggcccc
aggaatggcagaaacgcgccacgttctgaaggcaagacctaccagaatcttgagggcaag
ggcggctatggcgcggagaagaaggtcgacaaggagtag
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