Acidovorax radicis: KI609_11610
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Entry
KI609_11610 CDS
T08078
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arad
Acidovorax radicis
Pathway
arad03030
DNA replication
arad03410
Base excision repair
arad03420
Nucleotide excision repair
arad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI609_11610 (ligA)
03410 Base excision repair
KI609_11610 (ligA)
03420 Nucleotide excision repair
KI609_11610 (ligA)
03430 Mismatch repair
KI609_11610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arad03032
]
KI609_11610 (ligA)
03400 DNA repair and recombination proteins [BR:
arad03400
]
KI609_11610 (ligA)
Enzymes [BR:
arad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI609_11610 (ligA)
DNA replication proteins [BR:
arad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI609_11610 (ligA)
DNA repair and recombination proteins [BR:
arad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI609_11610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI609_11610 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI609_11610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI609_11610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF7340
Motif
Other DBs
NCBI-ProteinID:
UCU97269
LinkDB
All DBs
Position
2552515..2554623
Genome browser
AA seq
702 aa
AA seq
DB search
MTESLDLFSATAPVDKAQPAIKIEALRDQLNHWAHQYYVLDEPTVPDAEYDRVFRELQAL
EAAHPDLVTPDSPTQRVIGAVMEGLAPVRHTVPMLSIHTETDTEATGAQAFDVRVRKELG
LSESDPAIEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLP
EGVPPLLEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLS
FFAYGLGAITPPDQGGPVFRTHYEMLQTLKSWGFPVAAQVHIALGATELVAFHQQVGASR
DALPYDIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKI
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDTVIVRRAGDVIPEVVGVMPGNRTG
YVPNFRMPKACPVCGSAVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDK
LVDQLVDANVIRTLPDLYRLGLTSLIALERMADKSAQNVLAALEKSKQTTLPRFLFGLGL
RHVGEATAKDLARHFGTLDAIMDASVEQLLEVNDVGPVVAQSLHTFFQQPHNREVVEQLR
ACGVTWPEGPVAERAPQILAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYV
VAGEEAGSKLAKAEELGVPVLDEAGMLALLRQASDAPGAEAA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagagtttggatctcttttcggccacagcgcccgtagataaagcgcaaccagct
atcaaaatagaagcactgcgtgaccagctcaaccactgggcgcaccagtattacgtgctg
gacgagcccaccgtgcccgacgccgaatacgaccgcgtgttccgcgaactgcaggcgctg
gaggccgcgcaccccgacctggtcacccccgactcgcccacgcagcgcgtgattggcgcg
gtgatggagggcctggcgcccgtgcgccacacggtgcccatgctcagcatccacaccgaa
accgacaccgaggccaccggtgcccaggcgtttgatgtgcgtgtgcgcaaagagctgggt
ctgtccgaatcggaccccgccatcgaatacgtggccgagcccaagtttgacggcttggcc
atgagcctgcgctatgaaaacggccgcctcgtgcaggccgctacgcgcggtgatggcgag
gtgggcgaggacgtgacgcacaacatccgcaccatccggcagattccgctgaccttgcct
gagggcgttccgcccttgctcgaagtgcgcggcgaggtctacatgcgccgcgcagacttt
gatgctctcaacgagcgccagcgcgagcagggcggcaaaacctttgtgaacccacgcaat
gccgccgcaggtgcggtgcgccagcttgactcgaacatcaccgcccagcggcccctgagc
ttttttgcctacggcctgggcgccatcacgccgcctgaccagggtgggccggtgttccgc
acgcattacgagatgctgcagacgctgaaatcatggggttttccggtcgcagcgcaggtg
catattgcgctgggtgctactgaattggtagcgtttcaccagcaggtgggcgccagccgc
gatgcgctgccctacgacattgatggcgtggtctacaaggtcaacgcactgcagttgcag
cgcgacctgggcttcaagacccgcgagccgcgctgggccgtggcgcacaagtacccggcg
caggagatggccaccaagatcgaaggcatcgacgtgcaggtgggccgcaccggcaagatc
acgcccgtggcacgcttggcgccggtgtttgtgggcggcgtcaccgtcaccaatgccacg
ctgcacaacctgttcgagatccgcaagaagggtgtgcgggtgggcgacacggtcatcgtg
cgccgtgcgggcgatgtgatcccggaagtggtaggtgtgatgcctggcaaccgcacgggc
tatgtgcccaactttcgcatgcccaaggcctgccccgtgtgtggcagcgccgtggtgcgc
gaaaagggcgaggccaatcaccgctgcacgggcggcctgttctgcgccgcacagcgcaag
gaggccatcctgcactttgccgcgcgccgcgccatggacatcgagggcctgggcgacaag
ctggtggaccaattggtggacgccaacgtgatccgcacgctgcccgacctgtaccggctg
ggcctcacctccctcatcgcgctggagcgcatggccgacaaatcggcccagaacgtgctg
gccgccctcgaaaaatccaagcagaccaccttgccgcgttttctgttcggcctgggcctg
cgccatgtgggcgaggccacggccaaggacctggcgcggcactttggcacgctggacgcc
atcatggacgccagcgtggagcagttgctggaggtgaacgacgtgggccccgtggtggcg
cagagcctgcacaccttttttcagcaaccgcacaaccgcgaggtggtcgagcaactgcgc
gcctgtggcgtgacctggcctgagggccctgtggccgagcgtgccccgcaaatcctggcg
ggcaaaacggtggtgctgaccggcaccttacccaccctgagccgcgacgcggccaaggac
atgctggaggcggctggcgccaaggtggcgggttccgtcagcaaaaaaaccagttatgtg
gtggcgggcgaagaggctggcagcaagctggccaaggccgaggagctgggtgtgcccgtg
ctggacgaagcaggtatgttggcgctgctgcggcaggccagcgatgcgcctggggccgag
gcggcctga
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