Aminithiophilus ramosus: KAR29_03995
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Entry
KAR29_03995 CDS
T08824
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aram
Aminithiophilus ramosus
Pathway
aram03030
DNA replication
aram03410
Base excision repair
aram03420
Nucleotide excision repair
aram03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aram00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KAR29_03995 (ligA)
03410 Base excision repair
KAR29_03995 (ligA)
03420 Nucleotide excision repair
KAR29_03995 (ligA)
03430 Mismatch repair
KAR29_03995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aram03032
]
KAR29_03995 (ligA)
03400 DNA repair and recombination proteins [BR:
aram03400
]
KAR29_03995 (ligA)
Enzymes [BR:
aram01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KAR29_03995 (ligA)
DNA replication proteins [BR:
aram03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KAR29_03995 (ligA)
DNA repair and recombination proteins [BR:
aram03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KAR29_03995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KAR29_03995 (ligA)
MMR (mismatch excision repair)
DNA ligase
KAR29_03995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KAR29_03995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
RUBY_RBDX
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QTX33073
UniProt:
A0A9Q7APQ5
LinkDB
All DBs
Position
complement(893813..895894)
Genome browser
AA seq
693 aa
AA seq
DB search
MTVPSRGEASRRIAILREELARHEHLYYVLDRPEISDDVYDSLMTELLGLERAWPDLVEP
DSPTRRVGGRPVEGFEKVEHAAPMLSLENGFSEEDVRAFLARVERTLGRLPPLSGELKID
GLAVSLLYEEGRFVRGLTRGDGRFGEDVTSNLRTIRSLPLRLREALPGRLEVRGEVYMKK
EDFASLNAEREEEELPLFANPRNAAAGSLRQLDPAVTASRRLSVYLYQIVEAPLQGLTSQ
SAVLERLRELGFPVQPGHALCRDGDEALAYLERWKEERFSLPYVTDGAVLKVDDIAAWET
LGATAKTPRWALAFKYPPEEKKTRIREIIVSVGRTGALTPVALLDPVPLSGSVVQRASLH
NQDEVDRKDVRIGDRVIVRKAGEIIPEIVAVDVEARDGSERPFRLPERCPVCGASSVRLP
GEAVLRCPNRSCPAQLREGLRHFASRGAMDIRGLGEKIVAQLVDRGLVTTLADLYELDRE
KLLMLERMGEKSASNIIQALETSKKRPLARLLAALGIRYAGARVAEILAQAFGSVEALAA
ASEETLADVDGVGPVIAASVAAFFADEANRRTLDRLARLGLRTSEARRAASVPLPWEGRR
VVFTGELQRATRAEAEERVRALGALPSSSVSAKTFLVVAGEKAGGKLDKARAASAAIVDE
ETFWRLVGEAEDLFRSTAPEGEKEVTVENHDPR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgttccgagccgcggcgaggcctcccggaggatcgcgatcctccgggaggagctg
gcccgccacgaacacctctactacgtcctggacaggcccgagatctccgacgatgtctat
gattccctcatgaccgagcttctcgggctcgaaagggcctggcccgacctcgtcgaaccc
gactcgccgacgcgccgcgtcggcggcaggcccgtcgagggcttcgagaaggtcgaacac
gccgcgcccatgctgagcctggaaaacggcttctccgaggaggacgtccgggcctttctg
gcccgcgtcgagcggaccctgggccgcctgcctcctctgtccggcgagctcaagatcgac
ggccttgccgtctccctcctctacgaggaggggcgtttcgtccgcggcctgacccgcggt
gacggccgcttcggcgaggacgtgacctccaacctcaggacgatccgctcccttcccctg
cgcctccgcgaggctctgccggggcggctcgaagtgaggggcgaggtctacatgaaaaaa
gaggacttcgcctccctcaacgccgagagggaggaggaggagctcccccttttcgccaac
ccgcgcaacgccgccgccgggagcctgcgccagctcgatccggccgtgacggcctcgcgc
cgcctttcggtctatctctaccagatcgtcgaggcccctcttcagggtctgacgagccag
agcgcggtcctggagcgtctccgcgagctgggtttccccgtccagcccggtcacgccctc
tgccgcgacggcgacgaggccctggcctacctggagcggtggaaagaggaacgcttttcc
cttccctacgtcaccgacggcgccgtcctcaaggtggatgacatcgccgcctgggagact
ctgggcgcgacggccaagacgccccgctgggccctggccttcaagtatcccccggaggag
aagaagacgcggatcagggagatcatcgtctccgtggggcgcaccggtgccctcaccccc
gtggcccttctcgatccggtccctctctcgggctccgtcgtccagagggccagccttcac
aatcaggacgaggtggatcgcaaggacgtccgaatcggcgatcgggtcatcgtccgcaag
gccggtgagatcatccccgaaatcgtcgccgtcgacgtcgaggcccgcgacggcagcgag
aggcccttccgccttcccgagaggtgtcccgtctgcggcgcctcttccgtccgccttccc
ggcgaggcggttctccgctgccccaatcgctcctgtccggctcagctccgcgaggggctg
cgccacttcgcctcccgaggcgccatggatatccggggcctgggagagaagatcgtggcc
cagctcgttgacagggggctcgtgacgaccctggccgacctctacgagctggacagggaa
aaacttctcatgctggaacggatgggggagaagtcggcatcgaacatcatccaggccctg
gagacctcgaaaaagcgccccctggcccgtctcctggctgccctgggcatccgctacgcc
ggggcccgcgtggccgagatcctcgctcaggccttcggctccgtcgaggccctggccgcc
gcctccgaagagactctggccgacgtcgacggcgtgggacccgtcatcgccgcctcggtg
gcggccttctttgccgacgaggccaatcggcgcacgctcgatcgcctggcccgactgggc
ctgcgcacctcggaggcacgccgggccgcctcggtcccccttccctgggaggggagacgc
gtcgtcttcaccggcgagcttcagcgggctacccgggccgaggcggaggagagagtccga
gccctcggcgcccttccctcgtcgagcgtcagcgccaagaccttcctcgtcgtcgccgga
gagaaggcgggcggcaagctcgacaaggcccgcgccgcctcggcggcgatcgtcgacgag
gagactttctggcgcctcgtcggcgaggcggaagaccttttccggtcgaccgcgccggag
ggggaaaaagaggttacggtggagaatcacgatccacgataa
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