Arcobacter sp. L: ABLL_1637
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Entry
ABLL_1637 CDS
T01834
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arc
Arcobacter sp. L
Pathway
arc03030
DNA replication
arc03410
Base excision repair
arc03420
Nucleotide excision repair
arc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABLL_1637
03410 Base excision repair
ABLL_1637
03420 Nucleotide excision repair
ABLL_1637
03430 Mismatch repair
ABLL_1637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arc03032
]
ABLL_1637
03400 DNA repair and recombination proteins [BR:
arc03400
]
ABLL_1637
Enzymes [BR:
arc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABLL_1637
DNA replication proteins [BR:
arc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABLL_1637
DNA repair and recombination proteins [BR:
arc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABLL_1637
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABLL_1637
MMR (mismatch excision repair)
DNA ligase
ABLL_1637
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABLL_1637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAK73512
LinkDB
All DBs
Position
1659250..1661199
Genome browser
AA seq
649 aa
AA seq
DB search
MTKNEYDLNIEKLISWAKAYYVFDNPIATDEEYDKLSRACLAFEQENPQLSHPNSPNKRV
GGFVLEGFEKASHLSRMWSQEDVFNTEELEDWIKRASKVATNLDFYCQPKFDGASLNIIY
ENGILKQAITRGDGSIGEDVTNNVKTIFSIPLQIEEKSLIEIRGEIVIKKADFEKINIER
IKNNEQVFANPRNAAAGSLRQLDPNITAKRKLFFNVWGVGLNSLGYTKYSEMMDYIYSLG
FVKPPMQTLTSSVEGIEKLYHEIIAVRDNIEMMLDGMVIKIDDIETQDELGYTVKFPRWS
CAYKFPALEKTTKIKDIILQVGRTGVITPVAVVEPTDIEGVIVERASLHNFDEIARKDIK
INDEVIIIRSGDVIPKITKVFTERRDGTQFDIPRPTSCPDCSSELLDEGALIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGNKIVEQLVREKKIYDILDIYSLKYDDLQDLEGFKEKKI
NNLLNAIENTKGSELHRIINALGIEHIGEVASKQICLEFGLNVINLTFEQLIALDGIGEQ
MANSFTEFMRVNKELVEKLISIINPKVEEKIEVEENPFKGKTVVITGTMSISRGEIKKTL
ELLGAKVASSVSKKTDYVIFGEDAGSKYDKAIELNVTTITEDEMNKLIS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaatgaatatgatttaaatattgaaaaattaatctcttgggctaaagcctat
tatgtatttgataatccaatagcaactgatgaagagtatgataaactatctcgtgcttgt
ttagcttttgaacaagaaaatccacaactttcacatccaaattcaccaaataaaagagtt
ggtggatttgtactagaaggttttgaaaaagcttcacatttatctcgtatgtggtcacaa
gaagatgtttttaatacagaagaacttgaagattggataaaaagagcttcaaaagtagca
acaaatttagatttttattgtcaaccaaaatttgatggagcttcactaaatatcatctat
gaaaatggtattttaaaacaagcaattacaagaggtgatggaagtattggagaagatgta
acaaacaatgtaaaaacaatcttttctattccacttcaaatagaagaaaaatcattgata
gaaatcagaggtgaaattgttataaaaaaagctgactttgaaaaaataaatattgagcga
ataaaaaacaacgaacaagtttttgcaaatccaagaaatgcagctgctggaagtttgcga
caacttgacccaaatatcacagcaaaaagaaaactgttttttaatgtttggggagttggt
ttaaactcacttggatatacaaaatactctgaaatgatggattatatctactctttaggt
tttgtaaaaccacctatgcaaactttaacttcaagtgttgaaggaattgaaaaactttac
catgagattattgcagtaagagataatatagaaatgatgcttgatggaatggttataaaa
atagatgacatcgaaacacaagatgaattaggttatacagttaaatttccacgatggtca
tgtgcatataaattccctgctttagaaaaaacaacaaaaatcaaagatattatcttacaa
gttggaagaacaggagttattactcctgttgctgttgttgaaccaacagatattgaagga
gttatagtagaacgagcaagtttacataactttgatgaaattgcaagaaaagatataaaa
atcaatgatgaagtaataatcatacgaagtggtgatgttattccaaaaattacaaaagtt
tttactgaacgaagagatggaactcaatttgatattcctcgccctacttcttgtcctgat
tgttctagtgaacttttagatgaaggtgcacttataaaatgtcaaaatcttgattgtcct
tcaagagttgtaaactctatcatctattttgcaagtaaaaattgtatgaatattgatgga
ctaggaaataaaatagttgaacaacttgtaagagagaaaaaaatctatgatattttagat
atttactcattaaaatatgatgatttacaagacttagaaggttttaaagaaaaaaaaata
aataatcttctaaatgcaatagaaaatacaaaaggaagtgaacttcatagaattatcaat
gctttaggaattgaacatattggagaagtagcttcaaaacaaatctgcttagaatttgga
ttaaatgttataaatttaacttttgaacaacttatagccttagatggaattggtgaacaa
atggcaaactcatttactgaatttatgagagtaaataaagagttagtagaaaaattaatc
tctataataaatccaaaagttgaagagaaaattgaagtagaagaaaatccttttaaagga
aaaactgttgttatcactggaacaatgagtattagccgaggtgagattaaaaaaacactt
gaattattaggtgcaaaagtagcttcaagtgtctctaaaaaaacagattatgtgattttt
ggagaagatgcaggaagtaaatatgataaagccattgaactaaatgttacaacaataaca
gaagatgaaatgaacaaactaatttcttaa
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