KEGG   Arcanobacterium buesumense: HC352_02140
Entry
HC352_02140       CDS       T06546                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
arca  Arcanobacterium buesumense
Pathway
arca03030  DNA replication
arca03410  Base excision repair
arca03420  Nucleotide excision repair
arca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:arca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HC352_02140
   03410 Base excision repair
    HC352_02140
   03420 Nucleotide excision repair
    HC352_02140
   03430 Mismatch repair
    HC352_02140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:arca03032]
    HC352_02140
   03400 DNA repair and recombination proteins [BR:arca03400]
    HC352_02140
Enzymes [BR:arca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HC352_02140
DNA replication proteins [BR:arca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HC352_02140
DNA repair and recombination proteins [BR:arca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HC352_02140
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HC352_02140
   MMR (mismatch excision repair)
    DNA ligase
     HC352_02140
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HC352_02140
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia HHH
Other DBs
NCBI-ProteinID: QJC21436
UniProt: A0A6H2EJC9
LinkDB
Position
480010..482616
AA seq 868 aa
MSELCGKVFVGSSVIPFRIRVFRYDGYVDAKNFEEAQKSWQTLAPKLLHAQEVYYSTGEM
VMVDATYDTYMRQLRELEERFPQLWSPDSPSTKVGAKPSRTNVPAVRHAQRMYSLQDVFS
REELAEWMANVGHDLPEGAQFSVEVKIDGLAVNLTYRQGLLVQAATRGDGVTGEDITRNV
AAISTIPQRLSGEHIPELVEIRGEIFFPVAQFLEYNQKVDQRNKLIDEKNQLIAEANKEI
AIENRRIRQANATLAEHERKAERPTKRREAHIKPFVNPRNAASGTMRQDDSGSLALRSLD
FIAHGIGELRGVDDDLRATLGHQEGVYQTFKAWGLPVSDATQICTTLAQINDYLDKYQHA
RDSLPFEFDGVVIKIDDRRIQEELGYTTRVPRWAVAYKFPPTEVQTRLLDIRVQVGRTGR
VTPYAVMEPVFVDGSTVSQATLHNPSEVARKGVKIGDIVVVRKAGDIIPEVVGPIESERD
GTEVDFVMPTQCPDCGAPIAAISEGDVDLRCTNQQSCPAQLTQRVAHIGSRGGLDIEGLG
EESAAWLCQPDKNRPDALMALATGHTLIVEDSNGRTRKIFLTFAQRQEREIVDAHGAIVD
HQDIISPRLQKELEIPAQQTPILSTEADLFHLQADQARDVWVWQPEKSRGEVTGNWKYVR
AAWTKPQWSGAGDKRTIVKPSVPAKPLLTMLDEIEKAKTKDLWRKIVALNIRHVGPVAAR
ALSDEFESLDAMRAASLESLAQVDGVGTIIASSFLSWFDQSWHEEIVTRWTEAGVTFTHC
KPTAEVNQTLAGLTIVATGSLEHFTRDGINEAINAAGGKATGSVSAKTDFVVAGPGAGSK
ATKASNLGIRILTEEQFRELLATGIAPQ
NT seq 2607 nt   +upstreamnt  +downstreamnt
atgtccgagctgtgcggaaaagtgttcgttggttcttcggtcataccatttaggatacgt
gtttttaggtacgatggatacgtggatgcaaagaattttgaagaggcgcaaaaaagttgg
caaacgttagcgccgaagttattacatgcgcaagaagtctactattcaactggtgaaatg
gtcatggttgatgcgacttacgatacctatatgcgtcagttgcgggaactagaagagcgc
tttccgcagttatggtctccggattcaccatccactaaagttggtgccaaaccgtcgcga
actaatgtaccagctgtgcgtcatgcccagcgcatgtattctctgcaagatgttttttcg
cgtgaagaacttgctgaatggatggctaatgttggtcatgatttgcctgagggtgcgcag
ttttcggtagaagtgaagattgatggtttagctgtcaacttaacctatcgtcagggtctt
ttagtgcaggcagccactcgtggagatggagtgaccggtgaagacatcaccagaaatgtc
gcagcaatttcgactatcccgcaacgtctttctggagagcatattcctgagctggtagag
atccgtggcgaaatttttttcccggttgctcagttccttgaatataatcagaaagttgac
cagcgcaataaactcatcgatgaaaagaatcagttaattgccgaggctaacaaagaaatc
gccattgagaatcggcgcattcgtcaagctaatgcaacacttgccgaacatgagcggaag
gctgaacgtccaacgaagcgtcgggaagcgcatattaagcctttcgttaacccacgcaat
gctgcctccggtacgatgcgccaagatgattcaggatcgcttgccttacgttcactggac
tttattgcccacggtatcggtgaattacgtggagtcgacgacgatttacgtgccacatta
gggcaccaagaaggcgtgtaccaaacgtttaaggcgtggggattgccggtttctgatgca
actcaaatatgtactaccttggcgcaaatcaatgattatcttgataaatatcagcacgcg
cgtgattcgttaccatttgaatttgatggcgttgtaataaaaattgatgatcggcgtatt
caagaagagctaggctacacaacacgtgtgccacgctgggctgttgcttacaagtttcca
cccactgaagtacaaactcggcttctagatattcgggtacaagttggacgcaccggacga
gtgactccctatgcggtaatggaaccggtatttgttgatggttcgactgtttcgcaagca
actttacacaacccctcagaagtggctcgtaaaggcgtcaaaattggtgacatcgtcgtc
gtacgcaaagcaggagatattattccggaagtggtcggtccaattgaaagcgaacgcgat
ggcaccgaagttgactttgttatgcccactcaatgcccagactgtggtgcaccgatagcc
gctatatcggaaggtgacgttgatctacgatgcacgaaccaacaatcatgtcccgcccag
ctgactcaacgagtagctcatatcggttcgcgtgggggattagatattgaaggcttagga
gaagaatccgcagcatggctatgccagccggataaaaaccggccggacgccttaatggcc
ttagccaccggtcatactcttatcgtagaagatagcaatggtcgaacacgcaaaattttc
ttgaccttcgctcaacgccaagaacgagaaattgtcgatgctcacggggctattgtggac
catcaagatattatttcaccgcggctccaaaaagaacttgaaatcccggcgcagcaaact
ccgattctgagcaccgaagcagacctcttccaccttcaggctgatcaagcacgtgatgtt
tgggtttggcagccagaaaaatctcggggtgaagtgacagggaattggaaatatgtccgc
gctgcatggactaaaccacagtggagcggcgctggggataagcgtacaatcgttaaacca
tccgtaccggcaaaaccactgttaaccatgctggacgaaatagaaaaggcaaaaactaaa
gatttgtggcgcaaaatagtcgcgctcaatattcgccacgttgggccagttgctgcaagg
gcattgtccgatgaatttgaatctctggatgcgatgcgcgcagcgtcgctagaatcactt
gcacaagtagacggcgttggcacgatcatcgcttcatctttcttgtcgtggtttgaccaa
tcatggcatgaggagattgttacgcgatggaccgaggctggggtaacgtttacccattgt
aagcctacggccgaggttaatcaaacactggccgggctcactattgttgctaccggcagt
ctagaacacttcacccgtgacgggattaacgaagcgattaatgctgcgggaggaaaagca
accggttcagtttctgcgaaaacagacttcgtcgtcgccggacctggtgctggttctaaa
gctacaaaagcaagcaacctcgggattcggatcttaaccgaagaacaattccgcgaatta
ttagcaacgggcatcgctccgcagtga

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