Amycolatopsis rhabdoformis: VSH64_33870
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Entry
VSH64_33870 CDS
T09694
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSH64_33870 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_33870 (nth)
Enzymes [BR:
arhd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VSH64_33870 (nth)
DNA repair and recombination proteins [BR:
arhd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSH64_33870 (nth)
Prokaryotic type
VSH64_33870 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WSE27809
LinkDB
All DBs
Position
complement(7352128..7352811)
Genome browser
AA seq
227 aa
AA seq
DB search
MKRCLDEVYPDAKAELDFTNPLELLVAVVLSAQTTDVRVNLVTPALFKRYPSAAAYAGAD
RTELEEFLRPTGFFRAKANSVMGLGAALVERFDGEVPKKLDDLVTLPGVGRKTANVVLGN
AFDVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGELIPRKEWTMLSHRVIFHGRRVCH
ARKPACGACPLKKDCPSYGLGPTEFEVAAKLVKGEEREHILELAARG
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgttgcctcgacgaggtgtatcccgacgcgaaagccgagctggacttcacgaat
ccgctggaactgctggtcgcggtggtgctttccgcacagaccaccgacgtccgggtgaat
ctggtcacccccgcgctgttcaagcgctacccctcggcggccgcctacgcgggtgccgat
cgcaccgaactcgaggaattcctcaggcccaccgggtttttcagagccaaggccaactcg
gtgatgggcctcggtgcggcgctcgtcgaacgcttcgacggcgaggtgccgaagaagctc
gacgatctcgtcacactgcccggcgtcgggcgcaaaacggccaacgtggtgctcggcaac
gcgttcgacgtgcccgggatcacggtcgacacccacttcggccgcctcgtgcgccgctgg
ggctggacgaccgaggaagaccccgtcaaggtcgagcacgccgtgggggagctgatcccg
cgcaaggagtggacgatgctgtcccaccgtgtgatcttccacggccgccgcgtgtgccac
gcgcgcaagccggcctgcggtgcgtgcccgctcaagaaggactgcccgtcctacggactg
ggacccacggagttcgaggtcgccgccaagctggtgaagggcgaggagcgtgagcacatc
ctcgagctggcggcgcgcgggtga
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