Amycolatopsis rhabdoformis: VSH64_46525
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Entry
VSH64_46525 CDS
T09694
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arhd
Amycolatopsis rhabdoformis
Pathway
arhd03030
DNA replication
arhd03410
Base excision repair
arhd03420
Nucleotide excision repair
arhd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSH64_46525 (ligA)
03410 Base excision repair
VSH64_46525 (ligA)
03420 Nucleotide excision repair
VSH64_46525 (ligA)
03430 Mismatch repair
VSH64_46525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhd03032
]
VSH64_46525 (ligA)
03400 DNA repair and recombination proteins [BR:
arhd03400
]
VSH64_46525 (ligA)
Enzymes [BR:
arhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VSH64_46525 (ligA)
DNA replication proteins [BR:
arhd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VSH64_46525 (ligA)
DNA repair and recombination proteins [BR:
arhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VSH64_46525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSH64_46525 (ligA)
MMR (mismatch excision repair)
DNA ligase
VSH64_46525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VSH64_46525 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WSE30171
LinkDB
All DBs
Position
9985638..9987815
Genome browser
AA seq
725 aa
AA seq
DB search
MSSDLPHDQSAAPAESAVVAQDVTDVPADVRERHGILAEDVRGHQFRYYVLDSPIVSDGQ
FDALLGELQALEDEYPALVTPDSPTQNVGGTFSTEFTAYDHLERMLSLDNVFDTDEFLTW
VERVEKEIGSTEYLAELKIDGLAINLLYEDGKLTRGLTRGDGRTGEDVTLNIRTLEQVPD
ELTGTDEFPVPKLIEVRGEVFFRVEDFLELNAKMVESGKPPYANPRNTAAGSLRQKDPRI
TKERRLRLICHGLGKREGFEPVTQSHAYDALVAWGLPVSPHTRVLHTAKELTDHIAYWGE
HRHDAEHEIDGVVIKVDQVTLQRRLGTTSRAPRWAIAYKYAPEEAITTLLDIQVGVGRTG
RVTPFAVTEPVKVAGSTVARATLHNAEEVKRKGVLIGDRIVIRKAGDVIPEVMGPVVDAR
TGDEREFVMPTHCPECNTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLSEDALSEVELFRTKAGELSANAKKLLANLDAAKDRPL
WKVIVALSIRHVGPTAAQALAREFGSIARVEEASEEELADVDGVGPTIAHAVQEWFEVDW
HRGIVEKWRQAGVRMEEARDDSIPRHLEGLSIVVTGSLDGFSRDEAKEAIMSRGGKAAGS
VSKKTAFVVAGEAPGSKYEKAVQLKVPVLDEDGFRVLLERGPDAAAEVALDTSEDEGAAG
EPADG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaccttccccacgaccagtcggccgcccccgctgaatcggcggtggtggcc
caggacgtcaccgacgtccccgccgacgtgcgcgaacgccacggcatcctcgccgaggac
gtccgcgggcaccagttccgttactacgtgctggattcgcccatcgtgtccgacggccag
ttcgacgcgctcctcggcgagctgcaggcgctcgaggacgagtacccggcgctggtcacg
ccggattcgccgacgcagaacgtcggtggcacgttctccaccgagttcacggcgtacgac
cacctcgaacgcatgctgagcctcgacaacgtcttcgacaccgacgagttcctcacctgg
gtggagcgcgtcgagaaggagatcggctccacggagtacctggccgagctgaagatcgac
ggcctggccatcaacctcctctacgaagacggcaagctcacgcgcggcctcacccgcggc
gacggccgcacgggcgaggacgtcacgctcaacatccgcacgctggagcaggttcccgac
gagctcaccggcaccgacgagttccccgtgccgaagctcatcgaggtgcgtggcgaggtc
ttcttccgcgtcgaggacttcctggagctcaacgcgaaaatggtcgagtccggtaagccg
ccgtacgcgaatccgcgcaacacggccgcgggctcgttgcggcagaaggacccgcgcatc
accaaggaacgccggctgcggctgatctgccacggtctgggcaagcgcgagggcttcgaa
ccggtcacgcagtcgcacgcctacgacgcgcttgtggcctggggcctaccggtttcgccg
cacacccgcgtgctgcacacggcgaaggagctcaccgaccacatcgcctactggggcgag
caccgccacgacgccgagcacgagatcgacggtgtggtgatcaaggtcgaccaggtcacg
ctgcagcgccggctgggcaccacgtcgcgggcgccgcgctgggcgatcgcgtacaagtac
gcgcccgaagaggcgatcacgacgttgctggacatccaggtgggcgtcgggcgcacgggt
cgcgtcacgccgttcgccgtcacggagccggtgaaggtcgcgggttccacggtggcgcgt
gcgacgctgcacaacgcggaagaggtcaagcgcaagggtgtgctgatcggcgaccgcatc
gtgatccgcaaggcgggtgacgtcattcccgaggtgatgggaccggtcgtcgacgcgcga
acgggtgacgagcgcgagttcgtgatgccgacgcactgtccggaatgcaacacggagctc
gcctaccagaaagagggcgacaaggacatccgctgcccgaacacgcggttctgcccggcg
cagttgcgggaacggctgttccacctggccgggcgcggcgcgttcgacatcgaggtgctc
gggtacgaggcagccgtcgcgctgctggacgcgcgtgtggtcgccgacgagggtgacgtc
ttcgacctgagcgaggacgcgctgtccgaggtggagttgttccgcaccaaggcgggtgag
ctgtcggccaacgcgaagaagctgctggcgaacctcgacgcggcgaaggaccgtcccttg
tggaaggtgatcgtcgcgctgtcgatccgccacgtcgggcccacggcggcgcaggcgctg
gcgcgcgagttcggctcgatcgcgcgcgtcgaggaggcgagtgaggaggagctcgccgac
gtcgacggcgtggggcccacgatcgcgcacgccgtgcaggagtggttcgaggtcgactgg
caccggggcatcgtcgaaaaatggcgacaggccggcgtgcggatggaagaggcgcgcgac
gactcgatcccgcgccacctcgaagggctgtcgatcgtggtcacgggctcgctcgacggg
ttttcccgcgacgaggccaaggaggccatcatgtcccgcggcggcaaggcggcggggtcg
gtgtcgaagaagacggcgttcgtcgtggccggtgaagcgccggggtcgaagtacgagaag
gccgtgcagctgaaggtgccggtgctggacgaggacggtttccgcgtgctgctggagcgg
ggtccggacgcggccgctgaggtggcgctggacacgagcgaggacgagggggcggcggga
gagccggccgatgggtga
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