Amycolatopsis rhizosphaerihabitans: AB5I40_18040
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Entry
AB5I40_18040 CDS
T11563
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arhi Amycolatopsis rhizosphaerihabitans
Pathway
arhi03030
DNA replication
arhi03410
Base excision repair
arhi03420
Nucleotide excision repair
arhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB5I40_18040 (ligA)
03410 Base excision repair
AB5I40_18040 (ligA)
03420 Nucleotide excision repair
AB5I40_18040 (ligA)
03430 Mismatch repair
AB5I40_18040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arhi03032
]
AB5I40_18040 (ligA)
03400 DNA repair and recombination proteins [BR:
arhi03400
]
AB5I40_18040 (ligA)
Enzymes [BR:
arhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB5I40_18040 (ligA)
DNA replication proteins [BR:
arhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB5I40_18040 (ligA)
DNA repair and recombination proteins [BR:
arhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB5I40_18040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB5I40_18040 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB5I40_18040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB5I40_18040 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XEM74982
LinkDB
All DBs
Position
complement(3960978..3963137)
Genome browser
AA seq
719 aa
AA seq
DB search
MSSTDLPQDQVAVEAAQDVTDVPADVRERHGALAEEIRGHQFRYYVLDSPIVSDGQFDAL
LSDLQEIEDAYPALITPDSPTQNVGGTFSTEFTAHDHLERMLSLDNVFDTDEFLTWVERV
EKEIGSTEYLAELKIDGLAINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDELTG
TDEFPVPKLVEVRGEVYFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKITRER
RLRLICHGLGKRDGFEPVTQSHAYDALAAWGLPVSPHTRVLRTGKELTDHIAYWGEHRHD
AEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTGRVTP
FAVTEPVKVAGSTVARATLHNQEEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDARTGDE
REFVMPTECPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVLGYEA
AVALLDARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLANLDSAKDRPLWKVI
VALSIRHVGPTAAQALAREFGSLQRIEDASEEELADVDGVGPTIAHAVQEWFEVDWHREI
VEKWRRSGVRMEEERDESIPRNLEGLSIVVTGSLEGFSRDEAKEVIMARGGKAAGSVSKK
TAFVVVGDAPGSKYEKAVQLKVPVLDENGFRALLERGPEAAAELALDTGADQEGEGGDE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcaccgaccttccccaagaccaggtggccgtggaggccgcccaggacgtgacc
gacgtgccggccgacgtgcgcgagcggcacggcgcgctggccgaggagatccgcggccat
cagttccggtactacgtactggactcgccgatcgtctccgacggccagttcgacgcgctc
ctcagcgacctccaagagatcgaggacgcgtacccggcgctgatcacgcctgattcgccg
acccagaacgtcggcggcacgttctccaccgagttcaccgcgcacgaccacctcgagcgc
atgctgagcctggacaacgtgttcgacaccgacgagttcctcacctgggtcgagcgcgtc
gagaaggaaatcgggtcgacggagtacctggccgagctgaagatcgacggcctggccatc
aacctgctctacgaaaacggcaagctcaccaggggtctcacccgcggcgacgggcgtacg
ggcgaggacgtcacgctcaacatccgcaccctcgatcaggtgccggacgagctcaccggc
accgacgagttcccggtgccgaagctcgtcgaggtgcgcggcgaggtctacttccgcgtc
gaggatttccttgagctcaacgcgaagatggtcgaggcgggcaagccgccgtacgcgaac
ccgcgcaacactgcggccgggtcgctgcggcagaaggacccgaagatcaccagggaacgc
cggctgcggctgatctgtcacggtctcggcaagcgggacggcttcgagccggtcacgcag
tcgcatgcctacgacgcactggcggcctgggggttgccggtgtcgccgcacacgcgagtg
ctgcggaccggcaaggaactcaccgatcacatcgcctattggggtgaacatcgacacgac
gccgagcacgagatcgacggcgtggtgatcaaggtcgaccaggtcgcgttgcagcgccgc
ctcggcaccacgtcgcgcgcgccgcggtgggcgatcgcttacaagtatccgccggaagaa
gcgatcacgacgctgctcgacatccaggtcggcgtggggcgcacgggacgggtcacgccg
ttcgccgtcaccgagccggtcaaggtcgcgggctcgacggtcgcgcgggcgacgctgcac
aaccaggaagaggtcaagcgcaagggtgtgctgatcggcgaccggatcgtgatccgcaag
gccggcgacgtgatccccgaggtgctcggacccgtcgtcgacgcgcggaccggcgacgag
cgcgaattcgtgatgcccaccgaatgcccggaatgcggcacggaactcgcctaccaaaag
gaaggcgacaaggacatccggtgcccgaacacccggttctgtcccgcgcagttgcgggaa
cggctgttccaccttgccgggcgcggtgcgttcgacatcgaggtgctcgggtacgaggcg
gcggtcgcgttgcttgacgcgcgggtagtcgccgacgagggcgacgtgttcgacctcaac
gaggagtcgctcgccgaggtggagttgttccgcaccaaggcaggcgacctgtcggcgaac
gcgcggaagctcctggcgaacctcgattcggcgaaagaccgtccgctgtggaaggtgatt
gtcgcgctgtcgatccggcatgtcgggccgaccgcggcgcaggcgcttgcgcgagaattc
ggctcgctgcaacggatcgaggacgcaagcgaggaggaactcgcggacgtcgacggcgtc
ggcccgaccatcgcgcacgcggtgcaggaatggttcgaggtcgactggcaccgggaaatc
gtcgaaaaatggcgacggtccggggtccggatggaggaggagcgcgacgagtccatcccg
cggaatctcgagggcctgtcgatcgtggtgaccggttccctcgaagggttttcacgtgat
gaggcgaaagaagtcatcatggcgcgcggtggcaaggccgcgggatctgtgtcgaagaag
acggcgttcgtcgtcgttggcgacgcgccggggtcgaagtacgagaaggctgtgcagttg
aaggtgccggtgctggacgagaacgggttccgcgcgttgctggagcgcggtccggaagcg
gccgcggaactggcgctcgacaccggtgcggaccaggaaggcgagggcggcgatgagtga
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