Aeromonas rivuli: KYK33_14620
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Entry
KYK33_14620 CDS
T07884
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ariv
Aeromonas rivuli
Pathway
ariv03030
DNA replication
ariv03410
Base excision repair
ariv03420
Nucleotide excision repair
ariv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ariv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYK33_14620 (ligA)
03410 Base excision repair
KYK33_14620 (ligA)
03420 Nucleotide excision repair
KYK33_14620 (ligA)
03430 Mismatch repair
KYK33_14620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ariv03032
]
KYK33_14620 (ligA)
03400 DNA repair and recombination proteins [BR:
ariv03400
]
KYK33_14620 (ligA)
Enzymes [BR:
ariv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KYK33_14620 (ligA)
DNA replication proteins [BR:
ariv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KYK33_14620 (ligA)
DNA repair and recombination proteins [BR:
ariv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KYK33_14620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYK33_14620 (ligA)
MMR (mismatch excision repair)
DNA ligase
KYK33_14620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KYK33_14620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UBO73071
LinkDB
All DBs
Position
complement(3178108..3180252)
Genome browser
AA seq
714 aa
AA seq
DB search
MSESLTRHRQLCELLIEYGHQYYGLKKPTVPDAEYDRLKEELLALELAHPELRHSQLCGL
LTEYGHQYYVLDNPTVPDAEYDRLMRELIALESDHPELKTARSPSVRVGGAPLTAFNQVR
HEIPMLSLDNVFSSEELVAFEQRMRDRLKRELSFTFCCEPKLDGLAVSLLYVEGQLMQAA
TRGDGSTGEEITENVRTIKAIPLVLRGEGWPARLEVRGEVFMPKAGFEAMNERALAAGEK
VFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGIGGELLGDSHFARLCRLKEWGLPMSP
EVRLMEGAAGCQAFHDDILTRRDALKYEIDGVVYKVDSIPLQQELGFVARAPRWATAHKF
PAQEEMTLLENVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHNADEIERLGVMIGDTV
IVRRAGDVIPQVVAVVAAQRPADAREILFPSACPVCGSAVERHEGEAVARCAGGLFCEAQ
RAAAIKHFAARRAMDVDGLGDKIVDQLVDKGLVKTPADLFSLTAIQLAGLERMGPKSALN
LVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAASVEQLLAVPDVGEV
VAKHVYYFLRQPHNIEVLDALLAAGIHWPEIEQKEAAEQPFAGKTFVLTGTLTTLSRTDA
KAALQALGAKVAGSVSAKTDVLVAGEAAGSKLIKAQELGITIWTEEQLQAAIQP
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatccctcacccgccaccgtcaactgtgtgaactgcttatcgaatatggccat
cagtactacgggttgaaaaaaccgacagtaccggatgccgaatatgatcgattgaaggag
gagctacttgcccttgaattggctcatcctgagcttcgtcatagccagctgtgtggactg
cttacggagtacggccatcagtactatgtgctggataaccccaccgtacccgatgccgaa
tatgatcgcctgatgcgcgagttgatcgcgttggaaagcgatcatcccgagctgaaaact
gcccgctcccccagtgtgcgggtcggtggtgcgccactgacggccttcaatcaggtgcgc
cacgagatccccatgctcagtctggacaatgtgttcagcagcgaagagctggtggcgttc
gagcagcgcatgagggatcgcctgaaacgtgagctgagtttcaccttctgctgcgagccc
aagctcgatggcctggcggtgagcctgctttatgtggagggtcagctgatgcaggcggca
acccggggggacggcagcacgggggaggagatcaccgagaacgtgcgcaccatcaaggcg
atccccctcgtcttgcgtggtgaaggctggcccgcccggctggaagtgcgcggtgaggtg
ttcatgcccaaggctggtttcgaggcgatgaacgagcgagccctggccgcgggggagaag
gtgtttgtcaacccgcgcaatgccgccgctggcagcctgcgtcaactcgattcccgcatc
acggcgagtcgccccttgagcttctacgcctacggggtcggcattggcggcgagctgctg
ggggactcccacttcgcgcggctgtgccgtctcaaggagtggggcctgcccatgagcccc
gaggtcaggttgatggagggggcggcgggttgtcaggcattccacgacgacattctgact
cgccgtgacgccctgaaatatgaaattgacggggtcgtctacaaggtcgacagcattccg
cttcagcaagaactcggcttcgtggcccgcgccccgcgctgggccacggctcacaagttc
ccggcccaggaggagatgaccctgctggaaaacgtcgagttccaggtcggtcgtaccggc
gccatcaccccggtggccaagctcaaacccgtgttcgtcggcggcgtcaccgtctccaac
gccaccttgcacaatgccgacgaaatcgagcgcctcggcgtcatgatcggcgataccgtg
atagtgcgccgggccggggatgtgatcccccaggtggtggccgtggtggccgcccagcgc
cccgcggatgcccgggagatcctgttcccgagcgcctgccccgtgtgcggctcggcggta
gaacgacacgagggcgaggcggtggcccgctgcgccggtggtctgttctgcgaggcgcag
cgcgccgccgccatcaagcacttcgccgctcgccgtgccatggatgtggatggtctgggg
gacaagatagtggatcagttggtggacaaggggctggtcaagacaccggcggatctgttc
agcctcaccgccatccagctcgccgggctggaacgaatggggccgaaatccgcactcaac
ctggtggccgccatcgatgcggcgcgcagcaccaccttgccgcgcttcctgtttgccctt
ggcattcgcgaagtgggcgaggcgacggccctgaacctggccaatcatttcctgactctg
gatgccctgcgcgccgccagcgtcgagcagttgctcgcggtgccggatgtgggggaggtg
gtggccaaacatgtctactacttcctgcgccagccccataacatcgaggtgctcgacgcc
ttgctggccgccggtatccactggccggagattgagcaaaaagaggcggccgagcaaccc
ttcgccggcaagaccttcgtgctgaccggcaccctcaccaccctgtcacgcaccgatgcc
aaggcggccctgcaggctcttggtgccaaggtggccggttcggtgtcggccaagacggac
gtgctggtggccggtgaggcggcaggctccaagctcatcaaggcccaggagctcggcatc
accatctggaccgaagagcagttgcaagccgctatccagccctga
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