Acinetobacter radioresistens: DOM24_11375
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Entry
DOM24_11375 CDS
T05620
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arj
Acinetobacter radioresistens
Pathway
arj03030
DNA replication
arj03410
Base excision repair
arj03420
Nucleotide excision repair
arj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DOM24_11375 (ligA)
03410 Base excision repair
DOM24_11375 (ligA)
03420 Nucleotide excision repair
DOM24_11375 (ligA)
03430 Mismatch repair
DOM24_11375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arj03032
]
DOM24_11375 (ligA)
03400 DNA repair and recombination proteins [BR:
arj03400
]
DOM24_11375 (ligA)
Enzymes [BR:
arj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DOM24_11375 (ligA)
DNA replication proteins [BR:
arj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DOM24_11375 (ligA)
DNA repair and recombination proteins [BR:
arj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DOM24_11375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DOM24_11375 (ligA)
MMR (mismatch excision repair)
DNA ligase
DOM24_11375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DOM24_11375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
AphA_like
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AWV87160
LinkDB
All DBs
Position
complement(2426537..2428573)
Genome browser
AA seq
678 aa
AA seq
DB search
MESTAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDT
PTRRVGGQALSKFMTVRHAVPMLSLGNVFNKEDLFAFARRVEERLPGQQVKYEVELKLDG
LAISLWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSNQVAIPRLLEVRGEVLI
PKTGFLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGVAQCEPEHHL
NSMTESLYWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQ
QKQLGFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVIDLPETCPVCASPVV
MPEGEALARCSGELYCAAQRIESIRHFVSRKAMDIEGLGDRWVESLLHLELLKDVSDIYH
LHQHRNTLLGIEKMGEKSVQNLINAIEQSKKTTLARFIYALGIRGVGETTARMLANSFQT
LEALQQADVDSLKKVPDVGDITAEWIYDFFRAEHNLEVIDRLLAAGIHWDAPIASTRQPL
NGESWVLTGTLEHLTREQATQMLQALGARVSGSVSAKTKCVIAGEKAGSKLEKAQKLNIQ
TLNEKQFIELMETYGQVI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaatctacagcaggcattgtgacgcagatgcgtcaacttatacagctgatcgcacag
cataatcacgcttattatgtaatggatcagcccagtatttccgataatgaatatgattcc
ctgtttcatcagttaaaagcactcgaagagcagtatccggatcttgttcaaaatgatacg
ccgactcgtcgtgtaggtggacaagctctgagcaagtttatgacagtcagacatgcagtg
ccgatgctgtcgctcggaaacgtgtttaataaggaagacctgtttgcatttgcccgccgg
gtagaggagcgtcttccggggcaacaggtcaagtatgaggtcgagttaaaactcgatggg
ctggctatttcactctggtacgaaaatggtgagctggtacgtggtgtaacacggggcgat
ggagaaactggagaagatattacccagaatgttaaaactatccgtaatttgccaaagtac
ctttattctaatcaggttgctatacccagattactggaagtgcgaggggaagttctaatt
cctaaaaccggctttttaaagttaaatgctgaaaatgaagccaaaggtgaaaaaatattt
gccaatccgcgcaatgctgctgctggaagccttcgccagttagatccgggtattgccgct
gcacgtccattggccttttatgcttatggagttgcccagtgtgaaccagaacatcactta
aactccatgaccgaaagtctgtactggttacgtgatctgggttttgaaattgccgaacgg
caatttttatgtgattcgattgaagaagtacagcgccgctatgaaaaaattatggaagag
cgcgctgacctgggtgtagaaattgatggcatggtggttaaggtagatagccttaaacag
caaaaacagttgggctttctaagccgggaaccacgctgggcaactgcctataagttccct
gcaattgcagccctcactacagtagagaatatagactggcaggtaggacgaacaggtatc
ctgacgcctgttgcccggttaaatccggtatttgtcggaggtgtaacagtatccaatgta
acactgcataatattggcgagattcaccgtctggatgtaagaattggcgatacagtgagc
gtttaccgaaccggagacgtgattcctaaagtggaaaaagtctggcctgagtttcgtccg
gacactgccgaagtcatagacctaccggaaacctgtcctgtgtgtgcctcacctgtagtg
atgccggaaggtgaggctttggcccgctgttcgggagagttatattgtgcagcacagcga
attgaatcaattcgccattttgtgtcccgcaaggctatggatattgaaggtctgggggac
cgctgggtagagtcactgctgcatcttgaactgttgaaagatgtctcggacatttatcat
ctgcaccagcatcggaatacgttgcttggcattgaaaaaatgggtgaaaaatcagttcag
aacctgatcaatgcaattgaacaaagtaaaaaaactactctggcccgttttatttatgcc
ttggggatacgaggtgtcggtgaaacaacggcacggatgctggccaacagctttcaaacc
ctagaagccttgcaacaggcagatgtagatagcttgaaaaaagtgcctgatgtaggcgat
ataacagctgaatggatttatgattttttccgtgcagaacataatctggaagtaattgat
cgattgctggccgcaggcatccattgggatgcaccaattgcctcaacgcgtcagccattg
aatggtgaaagctgggttttaacaggcacacttgagcaccttacacgcgaacaggctacc
cagatgttacaggctttaggcgcacgtgtaagtggcagtgtatctgccaaaactaaatgt
gtgattgccggggaaaaggctgggtcaaaactggaaaaggcacaaaagcttaatattcag
acactaaatgaaaagcagtttattgagctaatggaaacctatggtcaagtaatttaa
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integrated database retrieval system
