Arachidicoccus soli: D6B99_09610
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Entry
D6B99_09610 CDS
T05648
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ark
Arachidicoccus soli
Pathway
ark03030
DNA replication
ark03410
Base excision repair
ark03420
Nucleotide excision repair
ark03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ark00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D6B99_09610 (ligA)
03410 Base excision repair
D6B99_09610 (ligA)
03420 Nucleotide excision repair
D6B99_09610 (ligA)
03430 Mismatch repair
D6B99_09610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ark03032
]
D6B99_09610 (ligA)
03400 DNA repair and recombination proteins [BR:
ark03400
]
D6B99_09610 (ligA)
Enzymes [BR:
ark01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D6B99_09610 (ligA)
DNA replication proteins [BR:
ark03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D6B99_09610 (ligA)
DNA repair and recombination proteins [BR:
ark03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D6B99_09610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D6B99_09610 (ligA)
MMR (mismatch excision repair)
DNA ligase
D6B99_09610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D6B99_09610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AYD47821
UniProt:
A0A386HQV4
LinkDB
All DBs
Position
complement(2259057..2261144)
Genome browser
AA seq
695 aa
AA seq
DB search
MFSPEQTKILTQQSQQFLKDNNPLQPLDAGVLRDVLRFHEYRYYVLDNPLITDTEYDILY
KKLEKFEQENPELITADSPTQRVGKNLTNQFATTVHLVPMLSLENSYNAEDLKDWDRKAR
EASSLNNVEYCVEPKFDGASISLLYENDLLVRAVTRGDGIQGEEITTNIKQIRSIPLHAP
FSKYGIQQVEIRGEVLMSKKSFKCFNDKQAEQGLQILANPRNAASGSLRLKNPQAVADRG
LDAFLYHISYVIYDKEIPELMETHAGALQLLWECGFRSPQKEKHVYQNIEEVIAHIADYE
QLRDELPYEIDGMVVKVNAINLQDKLGMTSHHPRWAMAYKFKARQATSILRSVEFQVGRT
GAITPVAKIDPVFLAGVTVSSISLFNEDIIREKDLRIGDTVLVERAGDVIPNIVKAQQEL
RTGIEEPIVFPKHCPVCNSDLHKPEEESVWRCINPNCEAQVVERIIHFVSKDAMDIRSFG
EANVRKFYQLGLLKEIPGVYQLDFQKISTLEGFGKKSIDNLQAAIEGSKQQSINRLIFAL
GIRYVGETTAKILANRINNLWDLKDFSLEDLMGLEDVGPKVAGSIFDFFQAPESRELLKK
LENEGLNFTNTKRGKTNEQSILEGKTFLFTGTLNQLKRSDAEAMVEEKGGKIVSGVSSKL
NYLVAGEAAGSKLEKAKKLNTVNIISEEEFLKMIE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcccgaacaaacaaaaatattaacacagcagtctcaacaatttttaaaagac
aacaatcccttgcaaccattggatgcaggagttttgagagatgttttgcgttttcacgag
tatcgttattatgtattagacaatccattgataaccgatactgaatatgacatcttatat
aaaaagctggaaaagtttgagcaggaaaacccggaattaattacagcggattctcctacg
caacgagttggaaaaaatctgacgaatcagtttgcaacaactgtacatttagtgccgatg
ttgtctttggaaaactcttataatgcggaagatttaaaagattgggatagaaaagcccgc
gaggcatcctccttaaataatgtagaatattgcgtagaacccaaatttgacggcgccagt
atttctttgttgtatgaaaatgatttattggtgcgtgccgttacgcgtggagatggtatc
caaggggaagaaattactacaaatattaagcaaattcgctcaattcctttgcacgcgcca
ttttcaaaatatggcatacaacaagtggaaattcggggagaagtattgatgtcgaaaaaa
tcctttaaatgcttcaatgacaaacaagccgaacagggtttgcagatattagctaatccg
cgcaatgcggctagcggaagtcttcgtttaaaaaatccgcaagcggttgctgatcgtggt
ttagatgcttttttatatcatatcagttatgttatttatgataaggaaattcctgagttg
atggagacacacgcaggcgctctgcaattactttgggaatgtggctttcgttctcctcaa
aaggaaaaacatgtatatcaaaatatagaagaagtaattgcacatattgcagattatgaa
caactgcgcgatgagttaccttacgaaattgatggtatggtggtgaaggtaaatgcaatc
aatttgcaggataagttagggatgacttctcatcacccacgttgggcgatggcatataaa
ttcaaagctcgtcaagccacctccatactgcgctctgttgaatttcaggtagggcgcacg
ggggctattacgcccgttgcgaaaatagaccctgtatttcttgcgggtgttacggtaagt
tctatttctttgtttaatgaagatattattcgtgaaaaagatttacgtatcggcgatacc
gttttagtggaaagagcgggagatgtaattcccaatattgtaaaagcgcagcaagagtta
agaaccggaattgaagaacctattgttttcccaaagcattgtcctgtttgtaattcagat
ttacataagccggaagaagagagtgtttggcgttgtatcaatccgaattgcgaggcacaa
gtggtggaaagaataatacattttgtaagtaaggacgcgatggatatacgcagttttgga
gaggccaatgttcggaaattttatcagcttggtttgttgaaagaaatacccggtgtgtat
caattagattttcaaaagatttcgacgctcgaaggttttggtaaaaaatctatcgataat
ttacaagcagccattgaaggtagcaagcaacaaagtataaatcgtctgatttttgctttg
ggcattcgttatgtgggagaaacaacggcaaaaatattggcaaaccgtattaataatttg
tgggatttaaaagatttctctttggaagacttaatgggtttggaagatgtaggccctaaa
gttgccggcagtattttcgatttttttcaggcgccggaaagtagggagttgttgaaaaaa
ttggaaaacgaaggcttgaattttaccaacaccaaacgtggaaagacaaatgaacaaagc
attttagaaggaaagacatttttgtttaccgggactttgaatcaattaaaaaggagtgat
gccgaggcaatggttgaagagaaaggcggaaaaatagtgagtggtgtttcctcaaaatta
aattatctggtggcaggtgaagcggctgggagtaaattagaaaaagcaaaaaaattaaat
actgtaaatattatttcagaagaagaattcctgaagatgatagagtaa
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integrated database retrieval system
