Rhizobium rhizogenes K599: B0909_02660
Help
Entry
B0909_02660 CDS
T04767
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aro
Rhizobium rhizogenes K599
Pathway
aro03030
DNA replication
aro03410
Base excision repair
aro03420
Nucleotide excision repair
aro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B0909_02660 (ligA)
03410 Base excision repair
B0909_02660 (ligA)
03420 Nucleotide excision repair
B0909_02660 (ligA)
03430 Mismatch repair
B0909_02660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aro03032
]
B0909_02660 (ligA)
03400 DNA repair and recombination proteins [BR:
aro03400
]
B0909_02660 (ligA)
Enzymes [BR:
aro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B0909_02660 (ligA)
DNA replication proteins [BR:
aro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B0909_02660 (ligA)
DNA repair and recombination proteins [BR:
aro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B0909_02660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B0909_02660 (ligA)
MMR (mismatch excision repair)
DNA ligase
B0909_02660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B0909_02660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AQS61286
UniProt:
A0AAN2A4S8
LinkDB
All DBs
Position
1:complement(1774169..1776343)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAA
FPALVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYEKGKLKTAATRGDGTTGENVTANIRTIKEIPNELSSDAPDV
VEVRGEVYMAKSDFMALNAQMEAEGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRHEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESDDPALSIKTASDIFTLKARQEASHLTKLENIDGFGKVSVR
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAANPASDAWA
ELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagattcccgtcgaaaacctgactgagcttgaagcctcttccgagctg
gcatttctggcagccgagcttgcccgtcatgacgcgctttaccacggcaaggacgcgccg
gagatttccgatgctgactatgatgcgctgaagcggcgcaatgatgccatcgaggcggct
ttcccggcattggtgcgggctgacagcccatcgaaaaaagtcggctttacaccgctgcca
acctttgcgcccatcgtgcatgcccgcccgatgctgtcgctcgacaacacgttttcggaa
gaggacctgcgcgatttcgtcagttccgtctaccgcttcctcgggcatctgcctgacgat
tccatcgcatttaccgccgagccgaagatcgacggcctttccatgtccattcgttatgag
aagggcaagctgaagacggcggccacacgcggcgatggcacgaccggcgagaacgtcacc
gccaatatcaggaccatcaaggaaatcccgaacgaattgtcttcggacgcgcccgatgtg
gtggaggtgcgtggcgaggtctatatggccaagagcgacttcatggcgcttaacgcccag
atggaggccgaaggcaagcagacctatgtgaacccgcgcaacacggcatccggttcgctg
cgccagctcgacgccaatgtgacggcgaaacgcaagctgcggttcttcgcctatgccttg
ggtgaagtctcgaatggtggccagccggcgcggattgccgatacgcaatatggcatcgtc
gagaaattccgggagtggggttttccggtcaatccgctgatgaagcgattcacctccgcc
cagcaattgcttgagcattataatgaaatcggcgtcgcacggcctgatctcgattatgat
atcgatggcgttgtctacaaggtcgaccggcttgatctgcaggaacggctgggctttcgt
tcgcgcagcccgcgttgggctacggcgcacaagtttccggccgaacaggctttcaccacg
gtcgagaatatcgaaatccaggtagggcgcaccggggcgctgacgccggtcgcacgcctg
accccgatcacggtcggcggcgtcgtcgtcaccaatgcgacactgcacaatgccgattat
atcgaaggcattggtaacagcggcgagcgcatccgccatgaggatcatgacattcgcatc
ggcgatacggtcatcgtgcagcgcgctggcgatgtcattccgcaggtgctggatgtgctg
ctggaaaagcgtccggccgaagcggtgaaatatgcgtttccggaaaaatgtccggtctgc
ggcagtcatgcggtgcgggagcgcaatgaaaagaccggcaagctcgattcggtcacgcgc
tgcaccggcggttttgtctgccgggcgcaggcggtggagcacttaaaacacttcgtctcg
cgtaatgccttcgatattgaagggctgggcaccaagcagatcgatttcttcttcgaaagc
gatgatccggcgctctcgatcaagactgcgtccgatatctttacgctcaaggcgcggcag
gaagcatcccacctgaccaagctcgagaatattgacggtttcggcaaggtcagcgtcagg
aagctgttcgatgccatcgacgcccgccgcgagatcgatctgcatcggctaatctttgcg
ctcggcatccgtcatgtcggcgagacaacggcgaagcttctggcgcgttcctatggcacc
tatgaacatttcgaagaggccatgaaggctgcggcgaatccggcgagtgacgcctgggct
gaactcaacagcatcgacggtatcggcgaggtggtggcccgtgccatcatcgagttctac
aaggaaccgcgcaatctcgacgtcatcgaccggctgatacgggagttgcagccgaaggag
gccgagaaaccttcgactgagggcagtcctgtggcaggcaagacggtggtcttcaccggc
tcgctggaaaaattcacgcgggatgaggcaaaagcccgggctgaaagcctcggcgcgaaa
gtggctggttccgtttcgaaaaagacggatattctggtggcggggccgggggcgggctcc
aagcttgccaaggcgacggaactgggcgtgcaaaccatggacgaggatgagtggctggcg
ctgatcggcggctga
DBGET
integrated database retrieval system
