Anguilla rostrata (American eel): 135243019
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Entry
135243019 CDS
T10705
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
arot Anguilla rostrata (American eel)
Pathway
arot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135243019 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arot03041
]
135243019 (eftud2)
Spliceosome [BR:
arot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135243019 (eftud2)
Complex C
U5 SnRNP specific factors
135243019 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
135243019
NCBI-ProteinID:
XP_064170505
LinkDB
All DBs
Position
17:1665889..1690419
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLGADDRDADEGDEDEDEEPADADDDVPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLMEQELPATVYDMEFLADL
MDSPELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDSDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSGIRISDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDENMVVSP
LLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAPN
SSAQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNR
FFGEFTGFVDMCVQHIPSPHGGARNKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQVEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggacttgtatgacgagtttgggaactacattggccctgagctggactctgac
gaggatgatgatctgggagcagatgaccgtgatgcagatgagggtgatgaagacgaagat
gaagagccggccgatgccgatgacgacgtcccggggatggaggtggtgctgcacgaggat
aagaagtactacccgacggcagaggaggtgtacgggccggaggtggagaccatagttcag
gaagaggacacgcagccgctcacagagcccatcatcaagccagtaaagaccaaacagttc
accctgatggagcaggagctgcctgccactgtctacgacatggagttcctggcagacctg
atggacagtcccgagctgatcaggaacatcaccctgtgtgggcacctgcaccatggcaag
acctgctttgtggactgcctgattgaacagacgcacccggagatccgcaagagagacgac
tctgatctccggtacacagatatcctcttcacagagcaggagagaggagtggggatcaag
agcacccccgtcacaatggtactgcccgactccagaggaaagtcttacctgttcaacatc
atggacaccccaggccatgtgaacttctccgatgaggtgacttcagggatccggatttca
gatggcattgtgctcttcatcgatgcagcagagggggtgatgctgaacacggagcggctg
atcaagcacgcggtgcaggagcggctggccatcaccatctgcatcaacaaggtggaccgg
ctcatcgtggagctcaagctcccgcccaccgacgcctactacaaactgcgccacatcgtg
gacgaggtcaacggcatgctcagcacatactccacagatgagaacatggtggtgtctcca
ctgctggggaacgtctgcttcgctagctcccagtacagcatctgcttcaccctgggatcc
ttcgccaaaatctactctgacacctacggagacatcaactacaatgagttcgccaagagg
ctgtggggagacatttacttcaaccccaaaacgcgcaagttcactaagaaagcccctaac
agcagtgcccagcgcagctttgtggagtttgtgctggagcctctctataagatcctttcc
caggtggtgggggatgtggacacctctctcccgcgggttctggatgagctggggatccac
ctgaccaaggaggagctgaagctgaacatccggccgctgctgcgtctggtgtgcaaccgc
ttcttcggcgagttcacagggttcgtggacatgtgcgtgcagcacatcccctcgccacat
gggggcgccaggaataagattgaacacagctacaccgggggcctggactctgacctgggg
gaggccatgacagagtgtgaccctgacggtcctctgatgtgccacactactaagatgtac
agcacggaggacggggtgcagttccacgcgtttgggagggtgctgagcgggaccatccag
gcgggacagccagtgaaagttttgggggagaactacaccctggaggacgaggaggactcc
caggtctgcaccgtgggacgactctggatctctgtcgctaggtaccaggtggaggtgaac
cgggtcccggctggaaactgggtcctcattgaggggtgcgaccagcctatcgtcaagacg
gccactatcacagagccgcgcggcaacgaggaggctcagatcttcaggccgctgaagttc
aacacggcctccgtcattaagatcgccgtggagccggtcaacccctctgagctgcccaaa
atgctggacggcctcaggaaagtcaacaagagctacccctccctcacaaccaaggtggag
gagtctggagagcatgttatcctgggcacaggcgagctgtacctggactgcgtcatgcat
gacctgcgcaagatgtactccgagatcgacatcaaggtcgctgaccccgtggtgactttc
tgtgagacggtggtggaaacctcctcccttaagtgcttcgcagagacgcccaataaaaag
aacaagatcaccatgatcgccgagccgctggagaagggcctggccgaggacatcgagaac
gaggttgtgcagatcacctggaacaggaagaagctgggagagttcttccagaccaagtat
gactgggatctgctggctgctcggtccatctgggccttcggacccgacaccacagggccc
aatatcctggtggacgacacgctgccctctgaggtggataaggctctgttgggctcagtg
aaggacagtattgtgcagggcttccagtgggggaccagggaggggcctctgtgtgatgag
cccatccgcaacgtgaagtttaaaatcctggatgcagtcatcgctcaggagcccctgcac
cgcggggggggccaggtgatccccacggcccgcagggtggtgtactccgccttcctcatg
gccactccccgcttgatggagccctattactttgtggaggtgcaggccccagctgattgt
gtgtctgcggtctacactgtgctggcccgtaggagaggtcacgtgacccaggatgctcca
atcccgggttccccgctctacaccatcaaggccttcatcccggccatcgactccttcggg
ttcgagacggacctgcgcacgcacacccagggacaggccttctccctgtccgtcttccac
cactggcagattgtgcccggtgacccgctggataagagcattgtgatccggcccctggag
ccacagccagccccccacctggcccgagagttcatgatcaaaacccggcgacgcaagggt
ctgagcgaggacgtcagcatcagcaagttctttgacgaccccatgttgttggagctggcg
aaacaggatgtggtgctcaattaccccatgtga
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