Entry |
|
Symbol |
lig4
|
Name |
(RefSeq) DNA ligase 4 isoform X1
|
KO |
|
Organism |
arot Anguilla rostrata (American eel)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:arot00001]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135250342 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:arot03400]
135250342 (lig4)
Enzymes [BR:arot01000]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135250342 (lig4)
DNA repair and recombination proteins [BR:arot03400]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135250342 (lig4)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
3:complement(17332744..17337690)
|
AA seq |
940 aa
MVLLTEEEKKSQTTSRCKLHSILDSWVSPVKMAAALDTKSGSEGSVAAEVPFHHLCTTLE
KIQKAKLRPDKTKCLRDFLDSWRKFHAALHKDNPNTTDSFYPAMRLIVPSFERERMAYGI
KENMLAKLYIDVLGLPKNGPEAHKLLNYRAPTTSQGEAGDFALMAYFVLKKRCTSQGNLT
IKEVNDFLDSVALNNASKQKDLVKKNLLHLITQSSALEQKWLIRMILKDMKLGMSKETVL
HVFHRDAAELYNVTTDLDKVCRQLHDPSVSLSEVSIGLFSAFRPMLAAVANVKQVEKQMN
NRSFFIETKLDGERIQVHKDGDVYKYFTRNSYEYTQQFGASPLQGSLTPFIHNIFKPHVR
NCILDGEMMAYNLTVDAFIQKGTKFDIKRLVDDSELQTCFCVFDVLLLNDQKLGNETLKK
RDEMLQTVFTPIKGRMQLVQKTEAKTMQEVVDALNEAIDNREEGIMVKDPLSIYKPDKRG
EGWLKLKPEYMDGLMDELDLLIIGGYWGKGRRGGMMSHFLCAVAETPEPGEKPSVFHSFC
RIGSGYTMKELYDLGLKLAKHWKVYRKNDPPASILCTTEKPEVYIEPWDSVIIQVKAAEI
VDSDMYKTNCSLRFPRIERMREDKEWHQCMTLADLEQYRSKSSGKLASRHLLLNDDEPQK
KKRKLVAKPKKAIGIIDHFKAQDLSGVAKETDMFEDVEFCVLNGNDEHSKADLEKGVASC
GGIVVQNPGKDTYCVIAAVENMRVKNLIAADQHDVVWATWLLECLERKQVVPWQPRHMIH
MSPPTKEHFAKEYDQFGDSYSANTDEQQLKEVFGRIRMKEEDLPSIADVEARYGLDDLPT
SMFRPFRVYMDRCSDIGDPKSYIPSTCLDTRALEFRFHGGTVESTLVEGVSHVIVAEETR
IMPLRTLRRVFTKKFKIVGETWVKDCIKAGHLLNDNDYLV |
NT seq |
2823 nt +upstreamnt +downstreamnt
atggttttgttaactgaagaggaaaagaagtcacagaccacttccagatgtaagttgcat
tcgattctagacagctgggtgtcacctgtcaaaatggcagcagcactggacaccaaatca
ggatctgaaggctctgttgctgctgaagtaccctttcatcatttgtgcaccactttggaa
aaaatacaaaaggccaaactcagaccagataaaactaagtgtctgagagacttcctggat
tcctggagaaagttccatgctgctctccacaaagataacccaaacaccacagactcattt
tacccagctatgcgtctcatagttccctcgtttgagcgagagaggatggcctatggcata
aaggaaaacatgctggctaaactctacatcgatgttttgggtcttccgaagaacggtcct
gaagcacataaacttctcaattaccgcgctcctactacatcgcaaggagaagctggggat
tttgcccttatggcctactttgttttgaagaaaaggtgcacaagtcaggggaatctaacc
attaaagaggtgaacgacttcttggactcggttgctctgaataacgcaagtaagcagaag
gatttggtgaaaaagaacctgttgcacctgatcacccagagctcagccctggagcagaag
tggctgatccgcatgattctgaaagacatgaagcttgggatgagcaaagagacggtcctg
catgtcttccaccgcgacgcggccgagctctacaacgtcaccacggacctggacaaagtg
tgccggcagctccatgacccctctgtgtccctcagcgaggtgtccatcgggctcttctcg
gctttcaggcctatgctggcagcagtcgccaacgtgaaacaggtggagaagcagatgaac
aaccggagcttcttcatcgagaccaagctggacggcgagcgcatccaggtgcacaaggac
ggggatgtgtacaagtattttacacgcaactcctatgagtacacacagcagttcggggcc
tcgccattacagggttctctgacgcccttcattcacaatatcttcaagccccatgtgagg
aactgcatcttggatggtgagatgatggcatacaacctcactgttgatgccttcatacag
aaaggcacaaagtttgacattaagaggttagttgatgactctgaactgcagacctgtttc
tgtgtctttgatgtcttgctactcaatgaccagaagttgggaaatgaaactctgaagaag
cgggacgagatgcttcagacggtcttcaccccgataaagggccggatgcagctggtgcag
aaaaccgaagccaaaacaatgcaggaagtggtggacgccctcaatgaagcgattgacaac
cgggaagaaggaatcatggtgaaggacccactgtccatctacaagccagacaaacgaggg
gagggttggctgaagctcaagccagagtatatggacggcctgatggacgaacttgacttg
ctgatcatcggggggtactggggaaaaggcaggcggggtgggatgatgtcccacttcctg
tgtgcagttgctgagactcctgaacctggagagaagccatcggtgttccattctttttgc
cgtattggttcaggttacactatgaaggagctttacgacctgggcttgaaactggccaag
cactggaaagtctaccgtaagaatgatcccccagcatcgatcctttgtactacagagaaa
ccagaggtgtacattgaaccctgggattctgtgatcattcaggttaaagcagccgaaata
gtcgacagtgacatgtataagacaaattgctcgcttcgatttcccaggatcgagaggatg
agggaggataaggaatggcatcagtgcatgactttagcggacctggagcagtacagaagc
aagtcttccgggaagttagcatcgagacaccttcttctcaatgatgacgagccacagaag
aagaagcggaagctagtggcaaagcctaagaaagccatcgggataatagaccattttaag
gcacaggacctgtctggtgtggcgaaagagactgacatgtttgaggatgtggagttctgc
gtattgaatgggaatgatgagcactccaaggccgatctggagaagggggtagccagttgt
ggaggcatcgtagtccagaacccaggcaaggacacctactgcgtgatagctgctgtggag
aacatgagggtgaagaacctgattgccgccgaccagcatgacgtggtgtgggccacctgg
ctgcttgagtgcctggagaggaagcaggtggttccgtggcaaccccgtcacatgatccat
atgtctccacccacaaaggaacactttgccaaggagtacgaccagttcggggacagctac
tcggctaacacggatgagcagcagttgaaagaggtctttgggaggatccgcatgaaggag
gaagacttgccttccatcgcagatgtagaagcaaggtacggcctggatgaccttcccaca
agcatgttcagacccttcagagtgtacatggaccgttgctctgacattggggacccgaag
agctatatcccttcaacatgtttggacacacgggcgctggagttccgtttccacgggggg
acagtggagtccacgctggtggaaggggtgtctcatgtcattgttgctgaggaaaccaga
atcatgccattaagaactctcagaagagtctttaccaagaagtttaagattgtgggagaa
acctgggtgaaggactgtatcaaagctggacatttgttgaatgataatgactaccttgtt
tag |