Anguilla rostrata (American eel): 135253515
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Entry
135253515 CDS
T10705
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
arot Anguilla rostrata (American eel)
Brite
Chromosome and associated proteins [BR:
arot03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
135253515 (smchd1)
DNA repair and recombination proteins [BR:
arot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
135253515 (smchd1)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135253515
NCBI-ProteinID:
XP_064188949
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Position
4:48408435..48442663
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AA seq
2014 aa
AA seq
DB search
MADSIILSTGCPGPLEKNVAQTPETIPRKVVVFDRRLENGDATEKVLDIQGMEFSAFLRT
VAKEFSISSEEPFVLLTTDRKEINADRFPELKDGNTLHLLRSVDQVLSVSTKERILFLPH
YDTLIKSGMYEYYASEGQKSLPYAFAELIDNALSATSNNVGVRKIHIRLMFDESQGKPAV
VVLDNGSGMTSKQLNNWAVYRLSKFTRESSEFESDHTGYVRPAPVPRSLNSDISYFGVGG
KQAAFYIAQSARMITKPAGSMDVHELLLSKDEFEKKEKNKEDIYKGYILNRKPGDSTHIT
NEDERFLHSLIAEEAGQDSFTAVVLTGVQPEHIAYLRADFHLWTRELAHVYHYYVHGIHG
NDTRPSKVDTDTSGNIDIQICLFEKLKVPRVVNLREINTDMQTLYVKSSVDTFEFKAQVE
EDGTVEGVLRYHPFLYDRETYPEDPYAMPTVPMEDDEDCIISNQEGRGKKPLFECFWNGR
LIPYTTVAEFDWCARPKKSGPVPAECFNRISGVLFANDKFQVSTNKLTFMDLELRLKDKE
TIFTRIVNGQEQRVKIHKEFTQWLKDCHEKWDKQIKFSGFSGTMTRTDVTTKKMQTPWAR
FTSIEWDGKTYKAGQYVKSVKTHPILFGTIVQFLLYGDHDGDVHSTGGQVQVAMEPKAIF
GEVRTIPISKIDRGATLTAIRKYIDDELAKLPDRLRVTWPEGNEWSQRDVRPAGTVFGPI
HVEILNKKGESMARMPGPNFSASKKLLIELTVIWHSPAGDVETNSHICQHGGKWAYWFKT
MENLSKLGKYTLYLQTVLNESNASVCAGEQLPSWKLDFSICEGCPERFVVGAVCTPYRVC
EPFSISLELLDAFGNPTRPTADLTPVLECSNLELSYEETKASGTTFTIKGVRARGRVKTC
LGKAFNVKITLPGLKRNSQTLKISLLPGLPHSLSVKPDSEETPLENGKAPMFQVEVKDEA
GNVTTHPKLIVQCQLQGAPNLPMAAVDCSNSGTGLLLDKPLHIKNIQKDQVIKAKFDVPS
LKNIEVVERTLKITPGHCVAKLEIFCEEEGNIMIFGDKENVGWTAGDVLENLHYRLFDEG
NRSVPITASIAQKIKVNWRADLNIEDLQEGNLPTLLIPNLVKDEHFYQVSFQDENASVEC
SFTIKPRPDEPKRMKATLKCGTSVRMGEELPGAIYLEVVDQFGNKTQALTSACVSSFGVS
AEGLDKSSLNISWQEKMEVINVQGVKFFSGVLGSRELCFAWRDFVEYVRITITAGPPVKL
RLLDGPEEPLQVINGKGMEKPFTVQLQDEWGNPSPDQRVVISLRPSATELKMKHSPASQP
VDADGKASFTLSQVMAPKGEYGIEFKAMFNKKSIPGPTVKLKVVPDPNKPVKLSVSYDTN
SVFPAGGFLTVFAVTVVAEDGGAIANLSPASMSMLMWKGESSGPRPPPGAATLKCSKPKD
TEKHDCFYFRDKIIPDRVGKYTIQFVMCIEKNKCLWSNQYVINVVANAPMKLMTDSQPAT
PLVSNIQAVASRTLIESMCLKIMDEYDNPAGCDLDGSVLVSIKSSDDIEELPLFKGKSKT
ALFPLCKGVAHIKNLIIMENCPGTDGTEYILHFQPVIPGFKSENDLKPFELPFLFYNDSK
NQEQMATLTKKKDRLSQSLIVYRSLFDTNNQLISEMKDQLQDATNKEAHLKSDLRKMHIN
MTQLGTMEDIDALIREKVAEQERIRRQPRRTCTIPDIFRSNPDVLGKVAHLARVEDNDAA
KVISWHLSGDMDCVVTLTTAAARQIYEDTQGRQQVMPLDSVFWKSSNRPLPHVRNGQNSF
APVGNPVFVRDLLIFPEHTESCRIVFGNLLGDTILVDNLDAANHYRKGVVQNKTPCPTLL
TRQGERVRSNGKFGGLQNKAPSIEKLRGQVFGAPLPEQYYTLHRQIELLQQYRVAVAKCK
QVREDYEVHMQYMQSPEMVAKEGEMRAQEAQLKGIEHELGMSPTRRGSGSAVKRPAVESG
EPSGINSKRARRGERASALENAVTPGRVTRNRTP
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccattattttgagcactggttgccccggacctttagagaaaaatgttgca
caaacacctgaaacaattccacgaaaagtagtggtatttgaccgtcgtctagaaaacgga
gacgccaccgagaaagtactggatatccagggcatggagttcagtgcatttctgaggact
gtcgcaaaggagttttccatatcttcagaagaaccatttgtcctgttgaccacagacagg
aaggaaattaatgcggaccgatttccggagctgaaggatggaaatactttacaccttctt
cggtccgttgatcaagtcttgtcagtgtcaacaaaggaacgcatcctgtttctcccgcat
tatgacacacttatcaaaagtggcatgtacgagtactatgccagcgaggggcagaaatca
ttaccttatgcctttgctgaacttattgacaatgccttgtcggcaacttcaaacaatgtt
ggggtcaggaaaatacacattcgattgatgtttgatgagtctcagggtaagcccgcagtg
gtcgtcttggacaacggctctggaatgacatcaaagcagctcaataactgggctgtctac
aggctatccaaatttactagggaaagcagtgaatttgagagcgatcatacgggctatgtt
cgacctgctccagttcctcgcagcctaaacagtgatatatcttactttggagttggagga
aagcaggctgctttctacatcgcacagtcagccaggatgatcaccaagccagcaggatcg
atggatgttcatgagctgcttctctcaaaagacgagtttgaaaaaaaggagaaaaataaa
gaagatatttacaagggttacattctaaacagaaagcccggtgactccacccacattacc
aatgaggatgagcggttcttgcacagtctcatcgctgaggaggcagggcaggacagtttt
actgctgtggttctgactggagtccagccagagcacatcgcctacctgagagccgacttc
cacctgtggaccagagagctggcgcatgtgtatcattattacgttcatggtatccatgga
aacgacacccggccttctaaggttgacactgatacctcaggcaacattgatattcagatc
tgcttgttcgaaaagctgaaggtgccaagggttgtgaaccttagagagatcaatactgac
atgcagactttgtatgtcaagtcttcagtggacacatttgagttcaaggctcaagtggaa
gaggatggcactgtggaaggcgttcttcggtaccatccattcctttatgacagagaaacc
tacccggaggatccatacgccatgccaaccgtgccgatggaagatgatgaagactgcatc
atctctaaccaagaaggccgagggaagaagcccctatttgagtgcttctggaacgggcgc
ctgataccgtacaccactgtggcagagttcgactggtgcgcgcggcccaagaagtcggga
cccgtgccggcggagtgcttcaaccgcatctcgggcgtcctcttcgccaacgacaagttc
caggtcagcaccaacaagctgaccttcatggacctggagctccggctcaaggacaaggag
accatcttcacacgcatcgtcaacggacaggaacagagagtgaagattcacaaagagttc
actcagtggctgaaggactgtcatgagaagtgggacaagcaaattaagttttctgggttt
agtggcaccatgacacggacggacgtcaccacaaaaaaaatgcagacaccgtgggcgagg
tttacatccatcgagtgggatgggaaaacgtacaaagctggtcaatacgtgaaatctgtg
aaaacccatcccattttatttggcacaattgtgcagttcctcctgtatggggatcatgat
ggggatgtgcactcaactgggggtcaggtccaggtggctatggagcccaaggcaattttt
ggtgaagtgaggaccattcccatctcaaagattgacagaggagccactctgactgccatt
aggaagtacattgatgatgaattagcaaagcttccagaccgactgagagtgacctggcca
gagggaaacgagtggagccagagggatgttcgtccagctgggactgtgtttggtccgatc
catgttgagatcctgaacaaaaaaggagagtcaatggcgcggatgcctggacccaacttc
agtgcatcaaagaaacttctgattgaattaacggttatttggcattctcctgctggcgat
gttgaaacgaactctcacatctgccagcacggcgggaaatgggcgtattggtttaaaacc
atggagaacctcagcaagcttgggaaatacaccctgtacctgcagacggtgctgaacgag
agcaacgccagcgtttgtgccggagagcagctgccgtcctggaagctggacttctccata
tgtgagggatgtcctgaaaggtttgtggtgggggcagtttgcaccccttacagagtgtgt
gagcccttcagcatctcactggagctgctggatgcttttggaaaccccactcgacctact
gctgacctgacgcctgtcctggagtgcagcaacctggagttgagttacgaggagaccaaa
gcaagtggaaccactttcaccattaaaggagttcgagccagaggccgtgtgaagacctgc
ctggggaaggcctttaatgtgaagatcaccttgccgggtctgaaacggaactctcagacc
ctgaaaataagcctcctccctggtctccctcattctctgagcgtcaaaccggactctgag
gaaacaccgctggagaacggaaaagcccccatgttccaggtggaggtgaaggacgaagcg
gggaacgtcaccactcaccccaagctcatcgtgcagtgccagttgcaaggtgctcccaac
ttgcccatggccgctgttgattgcagtaactctggaactgggctgctattggacaagcca
ttacacattaaaaacatccagaaagatcaggtcataaaggcaaaatttgatgtcccaagt
ctcaaaaacattgaagtagtggagaggacactgaagatcacacctggtcattgtgtggcc
aagttggagatattctgtgaggaggagggaaatatcatgatttttggagacaaggaaaac
gttggctggaccgcaggagacgtcctggaaaatctccactatcgactgttcgatgaaggg
aaccgcagtgtccccattacagcatctatagcacagaagatcaaggtgaattggagggca
gatttaaacatcgaggacctgcaggaaggaaatctacccaccctgctcattcccaatttg
gtgaaagatgaacatttctaccaggtttcatttcaggatgaaaatgcgtctgtggagtgt
tcctttaccatcaagccccgtccggacgagcccaagcgcatgaaggccacgctcaagtgc
gggacgtccgtgaggatgggagaggagctgcccggggcgatctatttggaggtggtggac
cagtttggtaataaaacgcaagccttgacgtcagcttgcgtgagttcattcggggtgtcg
gcggaaggtctcgataaatcaagcttgaacatctcatggcaggagaaaatggaggtgatc
aatgtccaaggagtgaagttcttcagcggcgtactgggatccagagagctgtgcttcgcc
tggagagacttcgtggagtatgtgcgcataaccatcacggccggccctccggtcaagctc
cggctcctggacgggcctgaggagcctttgcaggtcatcaacgggaagggcatggagaag
cctttcactgtacagctgcaggacgagtggggcaacccgtcacctgaccagcgagtcgtc
atttctctcaggccctcagccacggagctaaagatgaaacattcaccggcatcgcagccg
gtggatgccgatgggaaggcgagcttcaccttgagccaagtgatggcgcccaagggagaa
tatggcatcgagtttaaagccatgttcaataagaagagtataccaggacccacggtgaaa
ctgaaagtggtgccggatcctaacaaaccagtcaagctgtcagtcagctacgataccaac
tctgtgtttcctgctggggggttcctaactgtttttgcagtgacggtggtggctgaggat
gggggcgccatagcgaatctgagccccgcctccatgtccatgctgatgtggaagggcgag
tcctctggccccaggcctcctccgggcgctgccaccctcaagtgcagtaaacccaaggac
actgagaagcacgactgtttctacttcagagacaaaataatccctgaccgcgttgggaag
tacacaattcagtttgtaatgtgtatcgagaaaaataaatgtctgtggagcaatcagtac
gtaatcaatgtggtggcaaacgctccaatgaaactgatgacggattcccagccggcgact
ccattggtttctaatatccaagcagtggccagtcggaccctgattgagagcatgtgtctt
aagatcatggacgagtacgataacccggcaggctgcgacttggacgggtcagtgctggtc
tccatcaagagctccgacgacatcgaggagctccccctgtttaaggggaagtccaaaacc
gcgctgttccccctctgcaagggcgtggcccatatcaagaatcttatcatcatggagaac
tgtcctggcactgatgggacagagtacatcctgcacttccagcccgtcattcctggtttc
aaatcagaaaatgatttgaaaccgtttgagcttcccttcctgttttataatgattccaag
aaccaagagcaaatggcgaccttgaccaaaaaaaaggaccgactctcccagtcactcatt
gtgtacagaagtttgtttgacacaaacaatcagttgatctccgagatgaaagatcagctt
caggatgctaccaacaaagaggctcatctgaaatctgacctcaggaaaatgcatataaat
atgacacagctgggaactatggaagacatcgatgcgctgatcagggagaaggtggcggag
caggagaggatacggaggcagccgcgacgaacatgcacgatccccgacatcttcagaagc
aacccagacgtcctgggaaaggttgcccacctagcgcgggtggaggacaatgacgcggcg
aaggtcatctcctggcacctgtccggggacatggactgcgtggtgacgctgacgacggcc
gccgcccggcagatctacgaggacacccagggccgccagcaggtgatgcctctggactcg
gtcttctggaagagcagcaacaggcccctgcctcacgtaaggaacgggcagaacagcttt
gcgccagttggaaaccccgtgtttgtccgtgatcttctgattttcccagaacacaccgaa
agctgccggatagtctttggaaatcttctgggggataccattttggtggacaacttggat
gctgctaaccattatcgcaagggggtggtgcagaataagacgccgtgccccactctgctg
accagacaaggcgagcgggttcgcagcaatgggaagttcggaggcttgcagaacaaggct
ccgtccattgagaagctgcgagggcaggtgttcggcgcgcccttgccggaacagtattac
acgctccacaggcaaatcgagctgttgcagcagtaccgtgttgccgtggcaaagtgcaaa
caagtgagggaggactacgaggtgcacatgcagtacatgcagtctccggaaatggtggcg
aaggagggagagatgagggcgcaggaggcgcagctcaaaggcatcgagcacgagctcggc
atgagccctacgagaagggggagtggctctgcggtgaagcgccctgcggtggagtctgga
gaaccttccggaatcaattcaaaaagagcccgtcgtggggagagggcttcagccttggaa
aatgcagtaactcctggaagggtgacaaggaacaggacaccataa
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