Arthrobacter sp. Helios: ArtHe_03040
Help
Entry
ArtHe_03040 CDS
T11003
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
artl Arthrobacter sp. Helios
Pathway
artl03030
DNA replication
artl03410
Base excision repair
artl03420
Nucleotide excision repair
artl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
artl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ArtHe_03040 (ligA)
03410 Base excision repair
ArtHe_03040 (ligA)
03420 Nucleotide excision repair
ArtHe_03040 (ligA)
03430 Mismatch repair
ArtHe_03040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
artl03032
]
ArtHe_03040 (ligA)
03400 DNA repair and recombination proteins [BR:
artl03400
]
ArtHe_03040 (ligA)
Enzymes [BR:
artl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ArtHe_03040 (ligA)
DNA replication proteins [BR:
artl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ArtHe_03040 (ligA)
DNA repair and recombination proteins [BR:
artl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ArtHe_03040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ArtHe_03040 (ligA)
MMR (mismatch excision repair)
DNA ligase
ArtHe_03040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ArtHe_03040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
HHH_8
Zn_ribbon_TFIIB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UPO77701
LinkDB
All DBs
Position
708561..710810
Genome browser
AA seq
749 aa
AA seq
DB search
MSTAKTSPEEAVDAVSTDTPPSGGLREEYEALSDQVRKYRFAYYNEDAPLVSDAEFDELY
RRLEELEALHPELVTNDSPTQEVGGEVSAAFAPVEHLSRMYSLEDVFSLDELDAWVKRAV
ASVASIAPGSKVQWLTELKIDGLAVNLLYRNGELVRAATRGDGTTGEDITHNVLTIASIP
RRLKGENLPAEVEIRGEVFIPSKEFAHLNETMVEAGKAPFANPRNAAAGSLRQKDPNVTA
QRPLSMYVHGIGAREGLSAASQSETYELLKAWGLPTSPYYQVLDTYQEVLEFIARNGEHR
HDLAHEIDGIVVKVDDFALQRALGHTSRVPRWSVAYKYPPEEVNTKLLDIRVNVGRTGRV
TPYGIMEPVKVAGSTVEMATLHNQDVVKAKGVKIGDTVVLRKAGDVIPEIVGPVVALRDG
SERDFVMPTHCPSCGTELKPAKEGDVDIRCPNARSCPSQLRERVFHLAGRGAFDIEALGW
EAAIALTSPAEPENPPLTSEAGLFDLKIEDLADVRIERPKRSKGVVVGTELVPYFYTKGT
AKKPSEPSANTRKLFEELEKAKSQPLWRVLVALSIRHVGPTAARALATAFGSMENIRAAT
EEQLAHVDGVGPTIAAALEEWFAEDWHVEIVDAWARAGVRMADERDESLPRTLEGLTVVV
TGTLPNFSRDEAKEAIISRGGKASGSVSKKTDYLVAGENAGTKRDKAESLGVPILDEDGF
RALLDGTLQTGASDETAPAEEQPVEETSA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacagctaagacatccccggaagaagccgtcgacgccgtcagcacggatacgccg
cccagcggcggcctgcgcgaagagtatgaggcgctctccgaccaggtgcgcaagtaccgg
ttcgcgtactacaacgaggacgccccgctggtctccgatgccgagttcgatgagctgtac
cgccggctcgaagaactcgaggcactgcacccggagctggtgaccaacgattcgcccacg
caggaagtcggcggcgaagtctcagcagcgttcgcgccggtggaacacctgtcccggatg
tacagcctggaagacgtcttctccctggacgaactcgacgcgtgggtgaagcgggccgtt
gcctccgtcgcctccatcgcaccggggtcgaaggttcagtggctcaccgaactgaagatt
gatggcctggcggtcaatctgctgtatcgcaacggggaactggtccgcgcggccacccgc
ggagacggcaccaccggcgaggacatcacccacaacgtgctcacgatcgcctccattccg
cgccgcctcaagggcgagaacctgccggccgaggtggaaatccgcggcgaggtgtttatc
ccgtccaaggaattcgcccacctgaacgaaaccatggtcgaggcgggcaaggcgcccttc
gccaacccgcgcaacgccgccgccggatcgctgcggcaaaaagaccccaacgtcaccgcc
cagcgcccgctgagcatgtacgtgcacggcatcggcgcgcgggaagggctcagcgccgcc
agccagtccgaaacctacgagctgctcaaggcctggggcctgcccacctcgccctactac
caggtgctggacacctatcaggaggtgctggagttcatcgcccgcaacggcgagcaccgg
cacgacctggcgcatgaaatcgacggcatcgtggtcaaggtggacgacttcgccctgcag
cgcgccctcggccacacctcccgggtgccgcgctggtccgtggcctacaagtacccgccg
gaggaggtcaacaccaagctcctggacatccgggtcaacgtgggccgcaccggccgggtc
acgccctacggcatcatggagccggtcaaggtcgccggctccaccgtggagatggccacc
ctgcacaaccaggacgtggtgaaggccaagggcgtgaaaatcggcgacaccgtggtgctg
cgcaaggcgggcgacgtgatcccggagatcgtcggccccgtcgtcgcactgcgcgatggc
agcgaacgcgacttcgtgatgcccacccactgcccctcctgcggcacggagctgaagccg
gccaaggagggcgacgtcgacatccgctgccccaacgcccgctcctgcccctcgcagctg
cgcgaacgggtgttccacctcgccggccgcggcgccttcgacattgaggccctgggctgg
gaagcggcgatcgcgctgacctcgcctgcggaaccggagaatccgccgctgaccagcgag
gccggactgtttgacctcaaaattgaggacctggccgacgtccggatcgaacggcccaag
cgctccaagggcgtggtggtgggcaccgaactggtcccgtacttctacaccaagggcacc
gccaaaaagccgtccgagccctcggccaacacccgcaagctcttcgaggaactggaaaag
gccaagtcccagccgctgtggcgggtcctggtggcactgtccatccggcatgtgggcccg
acggcggcccgcgccctggcgacggccttcggttccatggagaacatccgggccgccacg
gaggagcagctggcgcacgtggacggcgtcggccccaccattgctgcggcgctggaggaa
tggttcgccgaggactggcacgtggaaatcgtggacgcctgggcacgggcgggcgtgcgg
atggccgacgagcgcgatgaaagcctgccgcgcaccctcgaaggcctgacggtcgtcgtc
accgggacgctgccgaacttcagccgcgatgaggccaaggaagccatcatcagccgcggc
ggcaaggcctccggatcggtttccaagaagacggactacctggtggccggggagaacgcc
ggcaccaaacgcgacaaggccgagtccctgggcgtccccatcctcgacgaggacgggttc
cgggccctgctggacggcactctccagacgggcgcatccgacgagaccgcgcccgcggag
gagcaacctgtggaggagacaagcgcatga
DBGET
integrated database retrieval system
