Arthrobacter sp. NyZ413: ABCW42_06580
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Entry
ABCW42_06580 CDS
T11382
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
artn Arthrobacter sp. NyZ413
Pathway
artn03030
DNA replication
artn03410
Base excision repair
artn03420
Nucleotide excision repair
artn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
artn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABCW42_06580 (ligA)
03410 Base excision repair
ABCW42_06580 (ligA)
03420 Nucleotide excision repair
ABCW42_06580 (ligA)
03430 Mismatch repair
ABCW42_06580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
artn03032
]
ABCW42_06580 (ligA)
03400 DNA repair and recombination proteins [BR:
artn03400
]
ABCW42_06580 (ligA)
Enzymes [BR:
artn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABCW42_06580 (ligA)
DNA replication proteins [BR:
artn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABCW42_06580 (ligA)
DNA repair and recombination proteins [BR:
artn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABCW42_06580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABCW42_06580 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABCW42_06580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABCW42_06580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XQZ30365
LinkDB
All DBs
Position
1406341..1408650
Genome browser
AA seq
769 aa
AA seq
DB search
MVRALRQDRYVSTAESETAVPADSVREEYENLADLVRKYRYAYYQEDAPTVSDAEFDALY
RRLEELEALHPELVSNDSPTQEVGGEVSAAFAAVAHLQRMYSLEDVFSLEELEAWVRKAE
ASVEKLGNGVPAIAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEI
PRQLSGSGYPSEVEIRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQKDPAET
AKRPLRMFVHGIGAREGLSATSQSDTYKLLEEWGLPVSPYLKVLGSFDEVLEFIRHFGEH
RHDLLHEIDGIVVKIDDFGTQRALGYTSRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGR
VTPYGVMEPVKVAGSTVEMATLHNQDVVKAKGVMIGDVVVLRKAGDVIPEIVGPVLALRD
QQDPPVREFVMPTECPSCGTPLAPSKEGDVDIRCPNAKSCPSQLRERVFHVASRGAFDIE
ALGWEAAIALTQPTEPETPPLRSEATLFSLTREDLADVRIRREKRSKGVGTGTFELVPYF
YTKATAKTPSKPTATTEKLFAELEKAKTQPLWRVLVALSIRHVGPTASRALATAFGSMEA
IRAASEEDLANVDGVGPTIAAALKEWFAVDWHREIVDSWATAGVRMVDERDAAIERNLEG
LTIVVTGTLPNLSRDEAKEAIIIRGGKAAGSVSKNTSYVVAGENAGSKLDKAEQLGIRVL
DEDGFRALLDGVLESAEEDAVAEDDAAAFEAQKTVEAANASAGEVEDSE
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
attgtccgagctttgcggcaagataggtacgtgagcacagcagagagcgaaaccgcagtt
ccagccgattccgtccgggaagagtacgaaaaccttgcggacctcgtccgcaagtaccgc
tatgcgtactaccaggaagatgcgcccacggtttcggacgccgagttcgacgccctgtac
cggcgcctcgaagaactcgaggcgctgcatccggaacttgtctccaacgattcccccacg
caggaggtcggcggagaggtgtcggcagcgtttgccgccgtcgcgcaccttcagaggatg
tacagcctggaggacgtcttctcgctggaagagctggaagcctgggtccgcaaagccgaa
gcgtccgtggagaagctcggcaacggcgtaccggccatcgcttggctgacggagctgaag
atcgacggcctggccgtgaacctgctgtatcgcgacggcaagctggtgcgtgcggccacg
cgtggcgacgggaccaccggtgaggacatcacccacaatgtgctcaccatcaaggagatt
ccgcggcaactcagcggaagcgggtacccctccgaggtggagatccgcggcgaagtcttc
attccgtccaaggccttcgccgaattcaacgaagccctgatcgaagccgggaaggcgccg
ctcgcgaatccccgcaatgccgcggccggttccttgcgccagaaggatcccgcggagacg
gccaagcgacccttgcggatgttcgtccacggcatcggagcgcgcgaaggcctcagcgcc
acaagccagtcggacacgtacaagctgctggaggagtggggcctcccggtcagcccctac
ttgaaggtcctgggttccttcgacgaagtcctggagttcatcaggcatttcggtgagcac
cgccacgacctcctgcacgagatcgacggcatcgttgtcaagatcgacgacttcggcacc
cagcgcgcccttggctacacctcgcgcgtgccccgctgggctgtggcctacaagtacccg
ccggaagaagtccacaccaagctcctggacatccaggtcaacgtcggccgcaccggccgc
gtcactccctatggcgtgatggaaccggtcaaggttgccggctcaacggtggaaatggcc
acgttgcacaaccaggacgtcgtcaaggccaagggggtcatgatcggcgacgtcgtggtg
ctccggaaggcgggcgacgtcatccccgagatcgtgggccctgtcctggccttgcgcgat
cagcaggatcctcctgtgcgcgaattcgtgatgcccacggagtgcccttcgtgtggcacg
cccctggcgccatcgaaggaaggcgatgtggacatccgctgccccaacgcgaagtcctgc
ccttcgcaattgcgggagcgggtcttccacgtagccagccgtggcgctttcgatatcgag
gccctcggctgggaagcggcgatcgcgctcacgcagccaacagagcccgaaactccgccg
ctgcgaagcgaggcgaccctcttcagcttgacccgcgaggaccttgcggatgtccgcatc
cgccgggaaaagcgatccaagggtgtgggcaccggcacctttgaactggtgccgtacttc
tatacgaaggccaccgcgaagactccttccaaacccaccgccaccaccgaaaagctgttc
gctgaactcgagaaggccaagacgcagcccctctggagggtcttggttgcgttgtccatc
cggcatgtggggccgacggcatcccgtgccttggcgacggccttcggcagcatggaggcc
atccgggccgcctccgaggaagacctggcgaatgtcgacggcgtggggcccaccattgcg
gcggcgctcaaggaatggttcgctgtcgattggcaccgggagatcgtggacagctgggcc
accgcaggggttcggatggtggacgaacgcgacgccgcaatcgaacggaacctcgaaggc
ctgaccatcgtggtcactggcacgttgcccaacctcagccgggatgaggcgaaggaggcc
atcatcatcaggggcggcaaggctgccggatcggtctccaagaacaccagctacgtcgtg
gcaggggagaacgcggggtccaaactggacaaggccgagcaactgggtatccgcgtcttg
gacgaggatggcttccgggcactgcttgatggtgtgcttgaatccgccgaggaagatgcc
gtggccgaggacgacgctgcggcttttgaggcccaaaaaaccgttgaggcggcgaacgcg
tccgccggtgaagtggaggattccgaatga
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