Arthrobacter sp. PAMC25564: E5206_16905
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Entry
E5206_16905 CDS
T06052
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
artp
Arthrobacter sp. PAMC25564
Pathway
artp03030
DNA replication
artp03410
Base excision repair
artp03420
Nucleotide excision repair
artp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
artp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5206_16905 (ligA)
03410 Base excision repair
E5206_16905 (ligA)
03420 Nucleotide excision repair
E5206_16905 (ligA)
03430 Mismatch repair
E5206_16905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
artp03032
]
E5206_16905 (ligA)
03400 DNA repair and recombination proteins [BR:
artp03400
]
E5206_16905 (ligA)
Enzymes [BR:
artp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E5206_16905 (ligA)
DNA replication proteins [BR:
artp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E5206_16905 (ligA)
DNA repair and recombination proteins [BR:
artp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E5206_16905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5206_16905 (ligA)
MMR (mismatch excision repair)
DNA ligase
E5206_16905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E5206_16905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QCB98384
LinkDB
All DBs
Position
complement(3626982..3629246)
Genome browser
AA seq
754 aa
AA seq
DB search
MSTGKTAAGTATQRDVPGEGQDQAGGLVPSGAVREEYEDLVEQVRKHRFAYYQEDAPIIS
DAEFDELYRRLETLEAMHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLEDVFSLAEL
EAWIAKAEANIARLGNGTPSWLTELKIDGLAVNLLYRDGVLVRAATRGDGTTGEDITHNV
LTIREIPQKLTGGNFPAEMEVRGEVFIPSKAFAEFNEALIEAGKAPLANPRNAAAGSLRQ
KDPAETAKRPLRMYVHGIGAREGLETASQSETYRQLAAWGLPTSPYFEVLPTLKDVLEFI
TRYGDKRHSLTHEIDGIVVKVDAFATQRALGYTSRVPRWAVAYKYPPEEVHTKLLDIQVN
VGRTGRVTPYGVMEPVKVAGSTVEMATLHNQEVVKAKGVKIGDIVVLRKAGDVIPEIVGP
VLALRDQQDPPVRDFVMPTECPACGTPLAPAKEGDVDIRCPNSRSCPAQLRERVFHLAGR
GAFDIEALGWEAAIALTQPAEPETPPLTTEATLFRLKPEDLANVRIRREKRSKGVATGEF
ELVPYFYSKGTAKTPSKPTATTDKLFKELEKAKTQPLWRVLVALSIRHVGPRASRALATA
FRSMDAIRQASEEELAHVDGVGPVIAAALKEWFAEDWHREIVASWAVDGVRMEDERDESM
PRTLEGLTIVVTGSLEGFSRDEAKEAILIRGGKAAGSVSKNTSYVVAGENSGTKLDKAEQ
LGVPVLDEDGFRALLADGPPNASDKEETQKVVAE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtgagtacagggaagactgcggcaggcaccgcaacacagcgtgacgtaccgggcgaaggg
caggatcaggcgggcgggctggtcccctccggggccgtccgcgaagagtacgaggacctc
gtcgagcaggtccgcaagcaccgcttcgcgtactaccaggaggatgcgccgatcatctcc
gacgccgagttcgacgaactctaccggcggctggagacgctcgaggccatgcaccccgaa
ctcgtcgccaacgattcgcccacccaggaggtcggcggcgaggtgtccgccgcgttcgcc
gccgtcgaacatctgcagcgcatgtacagcctggaggacgtcttttcgctggcggagctg
gaggcctggattgccaaggcggaagccaacatcgccaggctcggcaacggaacgccgtcc
tggctcaccgaactcaagatcgacggcctggccgtcaaccttctctaccgcgacggcgta
ctggtccgcgccgccacccgcggcgacggcaccaccggtgaggacatcacccacaacgtc
ctgaccatcagggaaatcccgcaaaagctcaccggcggcaacttcccggccgagatggag
gtccgcggcgaggtcttcatcccgtccaaggccttcgccgaattcaacgaggccctgatc
gaggcgggcaaggcgccgctggccaacccgcgcaacgccgccgccgggtctctgcggcag
aaggacccggcggagaccgccaagcggccactgcgcatgtatgtgcacggcatcggcgcc
cgcgaagggctcgagacggccagccagtcggagacctaccgccagctcgccgcgtggggg
ctgcccaccagcccgtacttcgaggtccttccaaccctcaaggacgtgctggaattcatc
acccgctacggggacaagcgtcacagccttacgcacgagattgacggcatcgtggtcaag
gtggacgccttcgccacccagcgggcgctcggctacacatcccgcgtgccgcgctgggcc
gtggcctacaagtacccgcccgaggaagtccacaccaagctgctggacatccaggtgaac
gtgggccgcaccggccgggtcaccccgtacggcgtgatggaaccggtcaaggtggcaggc
tccacggtggaaatggccaccctgcacaaccaggaggtcgtcaaggccaagggcgtgaag
atcggcgacatcgtggtgctgcgcaaggccggggatgtcatcccggagatcgtcggcccg
gtcctggccctccgggaccagcaggatccgccggtccgggacttcgttatgcccaccgaa
tgccccgcctgcggcacacccctggccccggccaaggagggggacgtcgacatccgctgc
cccaattcccgctcctgcccggcgcagctgcgcgaacgcgtcttccacctggccggccgc
ggcgccttcgatatcgaggcgctcggctgggaagccgccatcgccctgacccagccggcc
gagccggaaacgccgccgctgaccaccgaggcgacgctgttccggctcaaacccgaagac
ctcgccaacgtccggatccggcgggaaaagcggtccaagggcgtggccaccggcgagttc
gagctcgtgccctacttctacagcaagggcaccgccaagacgccgtccaagccgaccgcc
accaccgacaaactcttcaaagaactcgaaaaggcaaaaacccagcccctctggcgcgtg
cttgtggcgctgtccatccggcacgtcgggccgcgggcttcgagggcgctggccacggcg
ttccgcagtatggacgccatccggcaggcctccgaggaggagctcgcccacgtcgacggc
gtcgggccggtgatcgccgccgcgctgaaggaatggttcgccgaggactggcaccgcgag
atcgtggcgagctgggcggtcgacggcgtgcggatggaagacgagcgcgacgagtccatg
ccacggaccctggaagggctgacgatcgtcgtgacgggcagcctcgagggcttcagccgg
gacgaggcgaaggaagcgatcctgatccgcggcggcaaggctgccggatcggtgtccaag
aacacgagctatgtcgtggccggcgagaactccggcaccaagctggacaaggccgagcag
ctcggcgtcccggtcctggacgaggacggcttccgcgccctgctcgccgacggcccgccc
aacgcttccgacaaggaagaaacccagaaagtggtagccgaatga
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