Arthrobacter sp. 24S4-2: FCN77_07470
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Entry
FCN77_07470 CDS
T10423
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
artz Arthrobacter sp. 24S4-2
Pathway
artz03030
DNA replication
artz03410
Base excision repair
artz03420
Nucleotide excision repair
artz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
artz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCN77_07470 (ligA)
03410 Base excision repair
FCN77_07470 (ligA)
03420 Nucleotide excision repair
FCN77_07470 (ligA)
03430 Mismatch repair
FCN77_07470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
artz03032
]
FCN77_07470 (ligA)
03400 DNA repair and recombination proteins [BR:
artz03400
]
FCN77_07470 (ligA)
Enzymes [BR:
artz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCN77_07470 (ligA)
DNA replication proteins [BR:
artz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCN77_07470 (ligA)
DNA repair and recombination proteins [BR:
artz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCN77_07470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCN77_07470 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCN77_07470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCN77_07470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QCO97580
UniProt:
A0A4V1E9M3
LinkDB
All DBs
Position
1639114..1641441
Genome browser
AA seq
775 aa
AA seq
DB search
MCYQPDNVVDLGQDRSVSTGNTAEDTKTDSTNQASSGQVPSGEVREEYESLVEQVRKHRF
AYYQEDAPTVSDAEFDELFRRLETIEAMHPELVANDSPTQAVGGEVSAAFAAVEHLQRMY
SLEDVFSLEELEAWIAKAEASVAKLGNGSAGPTWLTELKIDGLAVSLLYRDGKLVRAATR
GDGYTGEDITHNVLTIKEIPQQLSGSNFPAEMEVRGEVFIPSKAFAEFNEALIEAGKAPL
ANPRNAAAGSLRQKDPAETAKRPLRMYVHGIGAREGLETASQSDTYRQLAEWGLPTSPYF
ELLGSLKEVLGFIKRYGDKRHSLTHEIDGIVVKVDDFATQRALGYTSRVPRWAVAYKYPP
EEVRTKLLDIAVNVGRTGRVTPFGVMEPVKVAGSTVGMATLHNQDVVKAKGVKIGDIVVL
RKAGDVIPEIVGPVLALRDQQDPPVRDFVMPTECPSCGTPLAPGKEGDVDIRCPNSRSCP
AQLRERVFHVASRGAFDIEALGWEAAIALTQPAEPETPPLTSEATLFRLTREDLADVRIS
REKRSKGVGTGEFELVPYFFSKGTAKSPSKPTVTTEKLFTELAKAKTQPLWRVLVALSIR
HVGPRASRALATAFGSMDAIRQASEEELAHVDGVGPVIAAALKEWFAEDWHREIVDTWAA
DGVRMADERDESTPRTLEGLTIVVTGSLEGFSRDEAKEAILIRGGKAAGSVSKNTSYVVA
GENAGTKLDKAEQLGLRVLDEDGFRELLANGPAVAAEEAAAATGDSEDHLEGTAE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtgtgttaccagccagacaatgtcgtagatctagggcaggataggtctgtgagcacaggg
aacacggcagaagacaccaagacagacagcacaaaccaggcaagcagtggccaagtgcct
tccggcgaggtgcgcgaggagtacgaaagcctggtggaacaggtccgcaagcaccgcttc
gcctactaccaggaagatgcgccgaccgtttcggacgctgagttcgacgaactcttccgg
cgcctcgaaacgattgaggccatgcacccggagctggtggccaacgattcccccacccag
gcggtgggcggcgaagtctccgccgcgtttgccgccgtcgaacacctgcagcggatgtac
agcctcgaggacgtcttttccctcgaggaactcgaggcctggatcgccaaggccgaggcc
agcgtcgccaagctgggcaacggcagtgccggtcccacctggctcaccgaactcaagatc
gacggcctggcggtcagcctgctgtaccgcgacggcaaactggtccgtgcagccacccgc
ggggacggctacaccggcgaggacatcacccacaatgtcctgaccatcaaggaaatcccg
cagcagctaagcggcagcaactttccggccgaaatggaagtccgcggcgaggtcttcata
ccgtccaaggccttcgccgaattcaatgaggcactgattgaggccggcaaggcgccgctg
gccaacccccgcaacgccgccgcaggctcgctgcgccagaaggacccggcggaaaccgcc
aagcgcccgctgcgcatgtacgtccacggcatcggtgcccgcgaaggcctggaaacggca
agccagtcggacacctaccgccagctcgccgaatggggactgcctacgagcccgtacttc
gagctgctcggcagcctgaaggaagtgctcggcttcatcaaacgctacggcgacaaacgg
cacagcctcacccacgagatcgacggcatcgtggttaaggtggacgatttcgccacccag
cgtgccctcgggtacacctcccgggtgccgcgctgggccgtcgcctacaagtatccgccg
gaggaagtccgcaccaagctgctggatatcgcggtgaacgttggacgtaccggccgggtc
accccgttcggcgttatggagcctgtgaaggtggccggctccaccgtgggaatggccacc
ctgcacaaccaggacgtcgtcaaggccaagggcgtgaagattggcgacatcgtggtgctc
cgcaaagccggggacgtcatcccggagatcgtgggccccgtgcttgcgcttcgggaccag
caggacccgccggtgcgggattttgtgatgcccaccgaatgcccgtcctgcgggacgccc
cttgctcccgggaaggaaggggacgtggacatccgctgccccaattcacgctcctgcccg
gcgcagctgcgtgaacgtgtgttccatgtggccagccgcggcgccttcgatattgaggcc
ctgggttgggaagccgccatcgccctgacgcagcctgccgaaccggaaacgccgcccctc
accagcgaagccacgctcttccggctcacgcgcgaggaccttgccgatgtccgcatcagc
cgcgaaaagcggtccaagggagtgggcacgggcgaattcgagctggtgccgtacttcttc
agcaagggcacggccaagtcaccttcgaagccgacggtcaccaccgaaaagctcttcact
gagctggcgaaagccaagacccagccgctgtggcgcgtcctggtggcgctgtccatccgc
cacgtcgggccccgcgcatcgcgcgcccttgccaccgccttcggctcgatggacgccatc
cggcaggcctccgaggaggagctcgcccacgtggacggcgtgggcccggtgatcgccgcg
gcgctgaaggagtggttcgccgaggactggcaccgtgaaatcgtggacacgtgggccgcg
gacggcgtgcggatggccgatgagcgggacgaatccacgccgcggactctggaagggctg
accatcgtggtcaccggcagcctcgaaggcttcagccgggacgaggccaaggaagccatc
ctcatccgtggcggcaaagccgcaggatccgtctccaagaacaccagttatgtcgtggcc
ggggagaacgccggaacaaaactggacaaggccgagcagctgggcctgagagtgctggac
gaggacgggttccgcgagctgctggccaacggtccggccgtcgcagctgaggaagcggcc
gctgctaccggggattccgaagaccacctggaagggacggcggaatga
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