Altererythrobacter rubellus: QQX03_06860
Help
Entry
QQX03_06860 CDS
T09134
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arue
Altererythrobacter rubellus
Pathway
arue03030
DNA replication
arue03410
Base excision repair
arue03420
Nucleotide excision repair
arue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QQX03_06860 (ligA)
03410 Base excision repair
QQX03_06860 (ligA)
03420 Nucleotide excision repair
QQX03_06860 (ligA)
03430 Mismatch repair
QQX03_06860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arue03032
]
QQX03_06860 (ligA)
03400 DNA repair and recombination proteins [BR:
arue03400
]
QQX03_06860 (ligA)
Enzymes [BR:
arue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QQX03_06860 (ligA)
DNA replication proteins [BR:
arue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QQX03_06860 (ligA)
DNA repair and recombination proteins [BR:
arue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QQX03_06860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QQX03_06860 (ligA)
MMR (mismatch excision repair)
DNA ligase
QQX03_06860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QQX03_06860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WIW94703
UniProt:
A0A9Y2F456
LinkDB
All DBs
Position
1349837..1351894
Genome browser
AA seq
685 aa
AA seq
DB search
MGISEADAANELMRLARQIAKHDRLYHAEDDPEISDQEYDALVRRNAELETQFPHLVRDD
SPSKKVGHAVSSSPLGKVTHEARMMSLDNGFSDEEIHEWVARVRRFLSLPDDEPVAITAE
DKIDGLSCSLRYESGKLVRAATRGDGQVGEDVTANVAYIADIPQELSGDNVPDLFEVRGE
VYMSKQDFAALNAAQHEAGGKLFANPRNAAAGSLRQKDASVTARRPLRFWAYGWGAASEV
PGDTQHAVMLQIEAWGFPLSPFLTVTNSVEDMLAHYAEIGRQRPDLPYEIDGVVYKVDRL
DWQQRLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTPVGRLAPVMVGGVTVT
NVTLHNRDEIARLGVRPGDRVVVQRAGDVIPQVVRNLTPEVEREAYLFPDACPECGSEAV
AEESEVDVRCTGGLICPAQRTERLKHFVSRKALDIDGLGEKTIDQFFALGWLESPADIFR
LKDRKDAILALEGWQDKSVDNLLASVENKREPDAARLLFGLGIRHVGEVTARDLMKNFHE
LPALRQAAEQARAGDEDALSEITSIDGVGGAVVEALGDFFHEPHNVEVWEDLLSLVSPPP
YIVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSK
LKKAAELGIEVIDEAGWAEIVAAAG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttccgaagcagatgccgccaatgagctgatgcggttggcgcggcagatcgct
aagcatgatcggctgtatcatgccgaggacgatccggagatcagcgatcaggaatatgac
gcgctggtgcggcgcaatgccgagttggaaacgcaattcccgcatctcgttcgcgatgac
agcccgtcgaagaaagtggggcatgcggtctcgtcgtctcctctaggcaaagtgacgcat
gaagcccgcatgatgagcctcgacaacggattttccgacgaggagatccatgaatgggtt
gcacgggtgcggcgtttcctgtcgctgcctgacgacgagccggttgcgataacggctgaa
gacaagattgacgggctgtcctgctcactccgttacgagagcggaaagctggtgcgtgcg
gcgacgcgcggagacgggcaggttggcgaagatgtcaccgcgaacgtcgcatatatcgct
gacattccgcaggaactgagcggcgataatgtgccagaccttttcgaagttcgcggcgaa
gtttacatgtcgaagcaggactttgctgcgctcaatgctgcgcagcatgaagcgggcggc
aagctgttcgcgaacccgcgcaatgccgcggcgggatccttgcggcagaaggatgcgagc
gtgaccgcgcggcggcccttgcgcttctgggcctatggctggggcgcggcgagcgaggtt
ccgggggatacccagcatgctgtgatgttgcagatcgaggcatggggtttccccctttcg
ccttttctgactgtcactaatagcgttgaggacatgctggcccactatgcagagattggc
cgccagcgtcctgatctgccctatgagattgacggggtcgtctacaaggtggatcggctc
gactggcagcaacgattgggttttgtggcaaaggctccgcgctgggcgctggcgcacaag
tttccagccgaacaagcggagacgacacttgaggccatcgacattcaggttggccgcact
ggcaagctgacgccggttgggcggctcgctccggtcatggtcggcggggtcacggtcacc
aatgtcacgctgcacaatcgtgacgagatcgcgcgcctcggcgtgcggccaggggatcgc
gtggtcgtgcagcgggcgggcgacgtgatcccgcaggttgtccgcaatctgacgccagag
gttgaacgcgaagcttatctcttccccgatgcgtgccccgaatgtggcagcgaagcggtg
gccgaagagagcgaagtcgatgtgcgctgcaccggggggctgatttgcccggcacaacgc
accgaacgcctaaagcacttcgtcagtcgcaaggcgctcgatattgacgggcttggcgag
aagaccatcgatcaattctttgctttgggctggctcgagagtccggcagatattttccgc
ctaaaggatcgaaaggacgcgattttggcgctcgaagggtggcaggataagtctgtggat
aatctgttggcttctgtggagaacaagcgcgagcccgatgcggcgcggctgctgttcgga
ctgggcattcgtcatgttggcgaagtcaccgcgcgcgatctgatgaagaatttccacgaa
cttccggcgcttcgccaggcagccgagcaagcgcgcgcaggcgatgaagatgcactatcc
gaaatcacctcgattgatggtgtaggcggcgcggtggtcgaagccttgggtgacttcttt
cacgagccgcacaatgttgaggtgtgggaagacctgcttagcctggtcagcccgccacct
tacatcgtagagacgctcgatagcccggtggcgggcaagaccgtggtctttactggcaag
ctggaaaccatgagccgcgacgaggccaaggcgcaggctgaaaggctcggtgcaaaggca
gccggcagtgtaagcgcaaagaccgacctgctggtcgcgggaccgggcgcggggagcaaa
ctgaagaaagcggcagagcttggcatcgaagtgattgatgaggcgggttgggccgaaatc
gtggcggcggctggatga
DBGET
integrated database retrieval system
