Achromobacter ruhlandii: AruCF_0751
Help
Entry
AruCF_0751 CDS
T11830
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aruh Achromobacter ruhlandii
Pathway
aruh03030
DNA replication
aruh03410
Base excision repair
aruh03420
Nucleotide excision repair
aruh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aruh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AruCF_0751 (ligA)
03410 Base excision repair
AruCF_0751 (ligA)
03420 Nucleotide excision repair
AruCF_0751 (ligA)
03430 Mismatch repair
AruCF_0751 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aruh03032
]
AruCF_0751 (ligA)
03400 DNA repair and recombination proteins [BR:
aruh03400
]
AruCF_0751 (ligA)
Enzymes [BR:
aruh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AruCF_0751 (ligA)
DNA replication proteins [BR:
aruh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AruCF_0751 (ligA)
DNA repair and recombination proteins [BR:
aruh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AruCF_0751 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AruCF_0751 (ligA)
MMR (mismatch excision repair)
DNA ligase
AruCF_0751 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AruCF_0751 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AOU91642
UniProt:
A0ABM8LQY5
LinkDB
All DBs
Position
857223..859322
Genome browser
AA seq
699 aa
AA seq
DB search
MSKAGGTPAAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTP
ESPTQRVGAAPVSAFGSVRHAVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQAE
YFCELKLDGLAISLRYEEGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGAAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
RGLPGTQSGLFDEASAGAADTSTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAF
YAKVGALRPELPYDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVG
AVLEKRPADAREFVMPKACPVCGSAIERLEDETIARCTGGLFCAAQRKQTLWHAASRKAL
DIEGLGEKLVEQLVDSGRVKTLADLFSLRPLELVGLDRMGQKSADNLVEAIDKARAPALG
RLLFALGIRHVGETTARDVARHFGTIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHN
RDVIDQLKAQGVQPVAEAVPEDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVS
KKTAYLVAGEDAGSKLTKAQELGVTVLDEDGLKELLGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggcaggagggacccccgcggcggaaaccgcggcgcgcctgcgcgcggaaatc
gagcagcacaacgtccgctactacgtctacgacgacccgtcgatctcggatgccgagtac
gaccggctgatgcgtgagttgcaggacctggaagccgcgcatccggaactggtcacgccc
gaatcccccacgcagcgggtcggcgcggcgccggtttcggccttcggcagcgtgcgccat
gcggtgccgatgctgtcgctgggcaacgccttcgacgaagaggacgtggcggcattcgac
cgccgcgttaccgacacgctgcgcggcgccggcctgctgggcccggcgcagcaggcggaa
tatttctgtgagctgaagctcgacggcctggcgatcagcctgcgctacgaggagggccgg
ctggtccaggctgccacgcgcggcgacggccagaccggcgaggacgtcacgtccaacatc
cgcacgatcaaggcgatcccgctgcaactgagcggcgcggcgcccaaggtgctggaggtg
cgcggcgaagtgctgatgaaccgcgccgatttcgagaagctcaacgcggcgcaggccaag
cgcgacgaaaaagtcttcgtcaacccgcgcaacgccgccgccggcagcctgcgccagctc
gacccgcgcatcaccgccaagcggccgctgcgctttttcgcctatggctggggcgaggtg
cgcggcctgccgggcacgcagagcggcctgttcgacgaagcgtcggccggcgcggcggat
acctcgaccctgcccgagaaatcgcatggcgccatgctcgactggctggcatcgctgggc
ctgccggtcaacgtgaagcacaaccaccgcgccaccggcgccgaggggctgatggccttc
tacgccaaggtgggcgccctgcggcccgaactgccttacgacatcgacggcgtggtctac
aaggtggattcgttgccggcgcagaagttgctggggttcgtggcgcgcgcgccgcgcttc
gcgctggcgcacaaattcccggccgaagaggccaccaccacgctgctggacatcgaggtg
caggtcggccgtaccggcgccatcaccccggtcgcccggctcaagccggtgttcgtgggc
ggcgtgaccgtcaccaacgccacgctgcacaatgaagacgagatccgccgcaaggacgtg
cgcatcggtgacaccgttatcgtgcgtcgcgccggcgacgtgatcccggaggtggtgggc
gcggtgctcgaaaagcgtcccgccgacgcgcgcgagttcgtcatgcccaaggcctgcccg
gtctgtggctcggcgatcgagcgcctggaggatgaaaccatcgcccgctgcaccggcggc
ctgttctgcgccgcgcagcgcaagcagacgctgtggcacgccgccagccgcaaggccctg
gatatcgagggcctgggcgagaaactggtggagcaactggtggacagcggccgcgtcaaa
acgctagccgatctgttcagcctgcgcccgctcgagctggtcgggctggaccgcatgggc
cagaagtcggccgacaacctggtcgaggccatcgacaaggcccgcgcgccggcattggga
cgcctgctgttcgcgctgggtatccgccacgtgggcgagaccacggcgcgcgatgtcgcg
cggcactttggcaccatcgaggccatcatggacgccgatgaggacgctttgtcctcggtg
cccgacgtggggccggtggtggcgggatcgatccgccgcttcttcgccgagcagcacaac
cgcgatgtgatcgatcagctcaaggcgcaaggcgtgcaaccggtggccgaggcggtgccc
gaggacaccacgctggcgggcaagacgttcgtgttgaccggcacgttgcccaactggacg
cgcgaggaggcctccatgcgcatccaggccgcgggcggcaaggtcagtgggtcggtgtcc
aagaagaccgcctatctggtggcgggcgaagacgccggcagcaagctcaccaaggcccag
gaactgggtgtcacggtactggacgaggacgggctcaaggaactgctgggttcgtcctga
DBGET
integrated database retrieval system
