KEGG   Luidia clathrata (European starfish): 117290232
Entry
117290232         CDS       T10152                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
arun  Luidia clathrata (European starfish)
Pathway
arun03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:arun00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    117290232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:arun03000]
    117290232
   04121 Ubiquitin system [BR:arun04121]
    117290232
   03036 Chromosome and associated proteins [BR:arun03036]
    117290232
Enzymes [BR:arun01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     117290232
Transcription factors [BR:arun03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    117290232
Ubiquitin system [BR:arun04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     117290232
Chromosome and associated proteins [BR:arun03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117290232
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     117290232
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like LRR_4 Cupin_8 JmjC JHD F-box LRR_At5g56370 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 117290232
NCBI-ProteinID: XP_033627389
LinkDB
Position
5:2287979..2322234
AA seq 1184 aa
MASSKDTGRSLRAKARRHYNEGEHQDDEIEGKRTWNLEEKLTSERFTNKWVKIMQGQEFT
MKFLQEGGFDTPMLFKSTEDLGIKIPGKDFTVNDVKQHVGSRRQVDVMDVNTQKGVEMSM
AQFAKYYENKERENLYNVISLEFSKTKLEDFVQAPSIVRQIDWVDIVWPRHLKKDQRDST
NTLAEMKYPKVQKYCLMSVAGCYTDFHVDFGGTSVWYHILHGKKVFWLIPPSEDNLELYE
NWVLSGKQSDIFLGDRVKECTKIVLEAGYTFMIPSGWIHAVYTPADSLVFGGNILHSFHI
HRQLRVAQIEDRTHVPFKFRYPFFWEMNWFALERYVHTLTGKSFLAKAKVDKRKSLTSVE
KSDEEASESQVIKKEKIDDETDGVDSKERLDGANSISDTSDVYESSHGVMGNAPKVQVKE
ENDVASPESDNTEEMDFHETETEIIVDKKPDPLTDFTNSGSSETMSNGDHKPNCLQRSLS
KDGSCTSNSDTVKVKREPVNEGYSDRQCPEIKQERENDEGTSGDTSRKQHVHLCRHELIG
LRVLHHQLENLPQGKRNVPELITDPDSLLQSAKEMLAEHLEDCQEGAVTGLPVLKCPKSN
VTRVPKALKCKASLGYRPVGAKRLASGMRRRRTRCKKCDNCTSDDCRQCHYCKDMKKYGG
PGRMKQSCVARQCLYPMLPHNALCVICTKEDRPGSSEVKGNPEVSSLMECHQCNEIVHPE
CLTEQKALEVDGVINEDLANSWECPKCVAKKDTQDENTEDITAIKKRKDSSSSGVKSQPK
RGRPPLKSTEVKPSSLFSKSMTLRGIGGYSSALRFYRPGRGRGGTRQQLLAKQKVLQAKI
HSMRGKKRRITQEARELRQSPLTTNPDNEENEENEQIVIKEEPKDRVDTILMEKRPASVK
PKFIIRPLPGNQPPKYCPMIDGTNHKVERSIWLHMFRFLGHGDLCRCLCVCKTWNRWCYD
ASLWHTINLTQVPLNKYVMVGVVRRQPVCVDLSGCNITKLQLAWLIVRIPALRELYLART
PLQAVAALCSANCPQLLVLDLQWVCLKDSHLATLLSPIREHRPGLLDDCTKLHKLRELRL
AGSDITDASMELLVEQTPYLVKLDLSYCGNITNHGLCALLIEESPLVHSLTELNVSGCHQ
LTDITLVSLAHCTRLRKVLALSCAHLTKDTWKAWAVDSNVQLIL
NT seq 3555 nt   +upstreamnt  +downstreamnt
atggcttcttcaaaagatacagggaggagcttgcgtgccaaagcaagacgccactataat
gaaggggagcaccaagacgatgaaattgaaggaaaacgaacttggaaccttgaggaaaaa
ctcaccagcgaaagattcaccaacaaatgggtgaaaataatgcaaggacaagagtttact
atgaagttcttacaagaaggcggctttgatacgcccatgctctttaagagcactgaagat
ttaggaatcaagataccaggcaaggacttcactgtgaatgatgttaaacaacatgtgggg
agtcgaagacaagtggatgtgatggacgtaaacacacagaaaggagttgagatgagcatg
gcacagtttgccaagtactatgaaaacaaagagagagagaatctctacaacgtcatcagt
ctggagttcagtaagaccaagctggaggactttgtacaagccccaagtattgtgaggcaa
atagactgggtggatattgtttggccgagacatttaaaaaaggatcaacgtgacagcacc
aatacactggctgaaatgaagtaccccaaagtgcagaagtactgcttgatgagtgtggca
gggtgctatacagatttccacgttgactttggcggcacatcagtctggtaccatattcta
catgggaaaaaggtgttttggttgattcccccgagtgaagacaacttagagctttatgag
aattgggttttatccggcaagcagtctgatatattcctcggcgatagagtgaaggaatgt
accaagatcgttctggaagctggatacacattcatgattcccagtggatggatccacgct
gtgtacactccagcggattccttggtgttcggtggcaatattctacacagcttccacatt
catcgacaactacgagtggcacagattgaagacaggactcatgtacccttcaagtttcgc
taccctttcttttgggagatgaactggtttgcgcttgagcgttacgtccacaccctgacg
gggaagtcctttcttgcgaaagccaaggtagataagagaaaaagcttaacatctgtggag
aagtccgatgaagaggcgagtgagtcgcaggtcatcaaaaaggagaaaattgatgatgaa
acagacggggttgattccaaggagagactcgatggtgcaaactcaatctcagacacaagt
gacgtttatgagtcgtcgcatggcgtcatgggaaatgctccaaaagttcaggtcaaagag
gaaaatgacgtcgcatcaccagaatcagacaacacggaagaaatggactttcacgaaaca
gagactgagatcatcgttgataagaaacccgatccattgacggatttcacaaatagcggt
agtagcgagacaatgtcgaatggagaccacaaaccaaactgtctccaaagatccctctcc
aaagacggctcgtgtacatcaaactcagacactgtgaaagtcaaaagagaacccgtcaac
gagggatactcggaccgtcaatgccctgaaattaaacaagaacgcgaaaacgacgagggc
acgtcaggggacacctcgagaaagcagcatgttcatttgtgtcgtcacgagttaatcgga
ctgcgagttctacatcaccaacttgaaaatcttccccaaggcaagaggaatgtcccggag
ctgatcactgacccggattcccttcttcagagcgcaaaggaaatgttagcagagcatctt
gaagattgccaagagggagccgtgacagggttacctgtgctaaaatgccccaagtccaac
gttacaagagtacctaaggcactgaagtgtaaggcatctcttggctatcgtccggtcggt
gctaagcgtctagctagcggcatgaggaggaggagaacacgatgcaaaaaatgtgacaac
tgcaccagcgatgactgtcgacaatgtcactactgtaaagacatgaagaagtatgggggt
ccaggtcgcatgaaacagtcatgtgtggctcggcagtgtctgtatcccatgttgccccat
aatgcattatgcgtcatctgcaccaaagaggatcgcccggggtcatcagaggtcaaaggt
aatccagaggtcagctcgctaatggaatgccatcagtgtaacgaaattgttcacccagag
tgtctgacggagcagaaggcgctcgaggtggacggtgtcatcaacgaagatctggccaac
agttgggaatgccccaagtgtgtggccaagaaagacacgcaggatgagaatacggaggac
atcactgcaatcaaaaagagaaaggatagtagcagtagcggagtcaaaagtcaaccgaaa
agaggtcggccaccactgaagagtacagaagtcaagccaagcagtctgttcagtaagagt
atgactctgcggggtattggaggatacagtagcgctctgaggttctacagaccggggcga
ggtcgtggaggcactcgacagcagcttctggccaaacagaaggttctccaagctaagata
cacagcatgaggggtaagaaacggcgtattacccaggaagctagggagttgcgtcagtct
cctttgactaccaaccccgataatgaagagaatgaagagaatgaacaaatagtcataaaa
gaagaacctaaggacagagttgacacgattctgatggagaaacgaccggcttcggttaaa
ccaaagtttatcatacgtccactccccggtaaccagcccccgaagtattgccctatgatt
gacggcaccaatcacaaagttgaaaggtcaatctggctacacatgtttcgcttcctcggc
cacggagacctctgccgttgtttatgtgtttgtaagacgtggaacaggtggtgttacgat
gcctccctttggcacactatcaatcttactcaagtaccgttaaataaatacgtgatggtg
ggtgtcgtacgccgacaacctgtttgcgttgatctgagtggatgcaatataaccaagctg
cagctagcttggttgatcgtccgtatacccgcactgcgggaactgtacttagcccggact
cccctgcaggcagtagcggcactgtgctcggcaaactgtccgcagttgctggttctcgat
cttcagtgggtctgcctcaaggactcgcacctcgccactttgctgtccccgatccgagag
caccgaccaggattacttgacgactgcaccaaactacataagctccgagagttgagattg
gccggtagtgacatcacagatgccagcatggagcttctagttgagcagacaccatacttg
gtgaagttggacttgagctactgtgggaatatcaccaatcatggactctgtgccttgttg
atagaggaatcacctttggtacactcactaacagaactgaatgtatctgggtgtcatcag
ctaactgacattacgttggttagtttagcccattgcactagactgcggaaagtcctggct
ctatcttgtgcacaccttactaaggacacgtggaaggcttgggctgttgacagcaacgta
cagcttattctgtag

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