Acipenser ruthenus (sterlet): 117400525
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Entry
117400525 CDS
T07327
Symbol
smchd1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
arut03036
]
117400525 (smchd1)
03400 DNA repair and recombination proteins [BR:
arut03400
]
117400525 (smchd1)
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117400525 (smchd1)
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117400525 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117400525
NCBI-ProteinID:
XP_034776565
LinkDB
All DBs
Position
3:56419308..56542114
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AA seq
1991 aa
AA seq
DB search
MEAGSGKHSSKNSMNKPSLFPVVSQDAAGPSPLSRTVFVFDCRLERSNAGGNEKKVESGG
ISFLEFRKTVCQVFGIAPEENFVITTTARKSITDHSFGEIQDGSTLYLLQSVDQILPSAI
RERIEFLPHYDTLVKSGMYEYYASEGQKSLPFAFAELIDNSLSATSHISGVRSIDLRCLF
DESQGKPAIAVIDNGRGMTSKQLNNWAVYRLSKFTRRDQEFESDHSGYVRPAPVARSLNS
DISYFGVGGKQAVFYIGQATRMISKPASSLDAHELLLSKEDFEKKEKNKEAIYSGFIRNR
KPGDSSHITSDDERFLHSLVKEEKNKESFTAVVITGIHTDHMQYLKNNFHLWTRELAHVY
HYYIHGPKGNDAKASVKDTGPVQKIDIQISMFEKGKVPKVINLRDVKDDMQTLYNSSSAD
SFEFVTHVDGDGVVEGVIRYHPFLYDRETYPEDPIGLSSKSDEDDDDSMLSEKGGRGKRP
IFECFWNGRLIPYTTVEDFEWCSTSKKRGPIPEECLNRISGVLFTNDKFEVSTNKLTFMD
LELRLKDKDTIFTRVINGQEQRVKIYREFALWLKECHEKFDKQIKFSGFKGIMTRTDIAA
KRMQSPWAIFTSVEWDGKTYKAGQMVKTTKTAPILYGSIVRFLLYGDHDGDIYATGGVVQ
IAVEPQALYDEVKTIPISKLDRNAVVSIIKKYVEDEMARLPDRLSVTWPEGEELDQNDIR
SAGTPIGAIRIEILNKKGEAMQKLPGTSHSGSKKLLVVELTVHLQFFSRTQGAIPHYVLT
GKAEKFSVGTLDAPVRVGVPFNIPLELLDEFGHPTHPTLDIKPVLECSALDVSHNGTMTK
KNNFIIKGVKAKGPVNNYQGKNYIVKVILPGLKEDTQMLKMRLMPGPPHTLKVKPDSEKL
IFENGTAFPFQVEVLDEAGNITAQPKLVVNCKFLGAPNLPVYAVDCSNTGTGILTGPVVH
ALKLEKDQYVTAIFEIPSCKGVLPIEKTIKLLPSTRAAKIQIFSLEGQKAIEIKHQDEIS
WTAGDSLQNLIFKMYDEGDREIIVTPALAEKIKANWTPNINKEHLVKGLLPDVKVPSAVK
DVRYCQVSFQDDHASLESAFSVKPIADEPKLLKASLKGVYNVKMGEELQGEIQLEVTDQF
GNKIQTLTSTCVNSLGISSDGLDKSSLKVSWQENTKTILVQGIKFIPGAPGSKELCFAWR
EFAEYIRVNLMAGPPAQISLVDWPADEPVTVVNGKELDKPFIVQLCDQWGNPSPEPLVKV
SLVKGNNIKIMPVPQVLKTDANGRADFGVFTIVAPRGENKLEIRATFNKVVLEGPVVNLN
VIPDQNKPVGLSVDYDKKASFPAGGFLTVFMVSVLSEDGNAMRNVNPAAITMRMWKGQGH
GSRLPASATVLNCNKPKENEKEGCFYFRDKVIPDRVGVYTIQFVYMVDKINMLCSDQISL
NVVPNEPVKLIPDEQPPTPVVSNIRAIASRTLVQSLTLKIMDEYNNPTCTDLDGKVVVTI
KSPNRNVTEIPQFQGKVKSVEFKLFKGSAEISNLILAENSLGVDGTEYILHFDPVIPDLK
DTTLTPFRLCFMFSNDFKKQQQMTALTREKDQISQSIVAYKSLFDTTNQLVGEMKCQAQD
ASVKEAQLKTELNKLKVEIPQVNVVQQIEEMIKQKSAEREQILKEPRRTCTIPMAPKGNP
DVLGKIAHLAQIENSEAAKVISWHLASDMDCVVTLTTDSARQIFKDTQGRQQVLPLDSIY
MKNLPQWNRPLPHLRNGKCHFEPMGNPVFARDLLIFPENVKHCQTVFGMLLGDTIILDDL
DASNSYRKEVVKITHCPTLLTRQGDRIRSNGKFGGLQNKAPSMDKLRGMVFGSPLPPMYY
TLGTQIDLLQQYRTAVIKLGNVKEELDLQLNYLHSPEMLQKRDELFSQEKQLKDIEKKLG
MTPARGTNGSGFKPKVLDMADDSPICTKRTRRDNSRKTFCSDEWISPPLKKLHMTSESET
SDSVVKKKRKT
NT seq
5976 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgggcagcgggaagcatagcagcaaaaatagcatgaataagccttctctcttc
ccggtggtatcccaagacgcggccggcccttctcctctcagccggacagtttttgtgttt
gactgccgcctggaacgcagtaatgctggtggtaacgagaagaaagtggagagtggaggt
atctcattcctggagttcaggaaaacagtgtgccaggtatttggtatagctccagaagaa
aactttgttattacaacaacagccagaaagtcaatcacagaccacagttttggtgagatt
caagatggaagtacattatacctgcttcagtctgttgatcagattttgccatcagcaata
agagagcgtattgaattccttccacactatgacacgctcgttaagagtggcatgtatgag
tattatgccagtgaaggccaaaagtctctaccttttgcctttgcagaattgatagacaat
tcactatcagcaacatcacacattagtggagtcagaagtatagacctcagatgtttattt
gatgaatcgcaaggtaaacctgctatagctgttattgataacggaagaggtatgacctct
aaacagctcaacaactgggctgtctacagattgtcaaagtttacaagaagagatcaagaa
tttgaaagtgatcattcagggtacgtacgtcccgctccagtggcccgcagtttaaatagt
gatatatcctattttggagtaggcggaaagcaagctgttttctacattgggcaagcaact
agaatgataagcaagccggccagttctttagatgctcatgaactacttctatctaaagaa
gactttgaaaaaaaggaaaagaataaagaggctatatacagtggtttcatcaggaacaga
aagcctggtgattcatcccacataaccagtgatgatgagaggttcctgcacagtcttgtg
aaggaagagaagaacaaggaaagctttactgctgttgtgattactgggatccacacagat
catatgcagtatctgaaaaacaactttcatctgtggactagagagttggcgcatgtttat
cactattacattcacgggccaaaagggaatgatgcgaaagcttcagttaaagacacaggc
cccgtccagaaaattgatattcagatctcaatgtttgagaagggaaaggttccaaaggtg
attaacctgagagacgtaaaggacgatatgcagaccctatacaacagttcatcggcagac
agctttgagtttgtgacacatgttgatggagatggagttgtagagggagtcatccggtat
catcctttcctttatgacagggaaacctatcctgaagacccaatcggcctatcaagtaaa
tctgacgaagatgacgacgactccatgctgagtgaaaaaggaggaaggggaaaaaggcct
atatttgaatgtttttggaatggacgcttgataccttacacaactgtggaagattttgag
tggtgctccacttcaaagaagagaggcccgattccagaggaatgcttaaaccgtatatca
ggtgttctcttcaccaatgacaagtttgaggttagcactaacaagctcacattcatggac
ctggagctgaggttaaaggacaaggacacaatcttcactcgggtgatcaatggacaggaa
caaagagtgaagatttacagagaatttgctctttggctgaaagaatgccatgagaagttt
gataaacagataaagttttctggtttcaaaggaataatgacaaggactgatattgcagca
aaaagaatgcagagcccgtgggcaatatttacatctgtggagtgggatggcaaaacgtac
aaagctggacaaatggtgaaaacaaccaaaactgcacccatattgtatggcagtatagtc
cggttccttctctatggggatcatgatggagatatatatgcgactggaggagttgttcag
attgctgtggaaccccaggctttgtatgatgaagtaaaaacgattccgatatctaaactt
gataggaatgctgttgtgagcattatcaagaagtatgtagaggacgaaatggcaaggctc
ccagataggctgtctgtgacatggcctgaaggagaggagttggatcaaaatgacatccgt
tctgctggaactcctataggtgcaattaggattgagatcttgaacaagaagggagaagca
atgcaaaagctccctggcacaagtcatagtggatcaaagaaactgctggtagtagaacta
acggttcatttgcaattcttcagtcgcacccagggggccatacctcactacgtcctcacg
ggcaaagcagaaaagttttctgttggtactttggacgctcctgttcgcgtaggagtacct
tttaacattccattggagctgcttgatgaatttgggcatcccacacacccaaccttggat
atcaagccagtcctagagtgcagtgctctggatgttagtcacaatgggacaatgacaaaa
aaaaataacttcatcattaaaggtgtgaaagcaaagggtcccgtgaacaactatcaggga
aagaactacattgtaaaagtcatcttgcctggattgaaagaagacacacagatgctgaaa
atgagactcatgcccggtcctcctcatacactgaaagtaaaacctgattctgaaaagcta
atttttgaaaatggaacagcttttccttttcaagttgaggtgctggatgaagcaggaaat
atcacagcgcaaccaaaattggtggtgaattgtaagttcctaggtgcacctaacttgcct
gtctatgcagtggattgcagcaatactggcactggaatattaactggtccagttgtgcat
gcattgaaactagagaaggaccagtatgtaactgcaatatttgaaataccaagctgtaaa
ggtgtacttccaatagaaaagacaatcaagctgcttcccagtactcgagcagccaagata
cagatcttcagtcttgagggacagaaagccattgaaatcaaacaccaggatgaaatcagc
tggacagctggggacagtctgcagaatcttatcttcaaaatgtatgatgagggggataga
gaaatcatagtgacacctgctttagcagaaaagattaaggctaactggacccccaatatt
aataaggaacacctggttaagggactgttgcctgacgtaaaggtaccgagtgctgtaaag
gatgtccggtactgccaagtgtccttccaggatgaccacgcatcactggagagtgctttt
agcgtaaagcccattgcagacgagccaaagctactaaaagcttcactgaaaggtgtttac
aacgttaaaatgggtgaagagttgcaaggggaaattcaattagaagttactgatcagttt
ggaaataaaattcagacattgacatcaacttgtgtgaattccctgggaatctcatcggat
ggacttgacaagtctagcttaaaggtttcctggcaggagaacacaaaaacaatactggtt
caaggaataaaatttattcctggagctcctggttccaaagaattgtgctttgcttggaga
gagtttgcagagtacattcgagtcaatttgatggcaggacccccagcacagatcagtctt
gttgactggccagcagatgagcctgtaacggtagtaaatggaaaagaactggataagcca
tttattgtccagctatgtgatcaatggggcaatccatcacctgaaccacttgtcaaagtc
tcattggtgaagggtaacaacataaagattatgccagtaccacaagtactaaaaacagat
gcaaatggcagagcagactttggagtgtttacaatcgttgcacctaggggagaaaacaag
cttgaaattagagccacttttaacaaagttgttttggagggacctgttgtaaatctgaac
gtcattccagatcaaaacaaacctgttggtctttctgttgattatgacaaaaaggcatca
tttcctgcaggaggctttttaacagtgtttatggtaagcgttctttcagaagatggcaat
gcaatgagaaatgtgaacccggctgctataacaatgcggatgtggaagggacaggggcat
ggatctcgactgccagctagtgctacagtgctcaactgtaacaaaccaaaggagaatgaa
aaagagggctgtttttacttcagggacaaagtaattcctgatcgagttggggtctacacc
attcagtttgtgtatatggtagacaaaattaatatgctgtgcagtgaccagatttcacta
aatgtggtacctaatgagcctgtgaaattgattccagatgaacagccgccaactccagtt
gtttcaaatatccgtgccattgccagtcggactttggttcaaagcttgactcttaaaatc
atggatgaatataacaaccccacttgtacagacctggatgggaaagtggtagttaccatt
aaaagcccaaatcggaatgtcacagagattccccagtttcaggggaaagttaagtctgtg
gaatttaaactctttaaaggttctgctgagatttcgaaccttattcttgcagaaaatagc
cttggtgtcgatggcactgaatatatccttcattttgacccagtcattccagacctgaaa
gacaccacattgacaccattccggctatgtttcatgttttcgaacgatttcaagaagcaa
cagcaaatgacagccctaacacgggaaaaagaccagatatcccaatcaattgttgcttac
aagagtttatttgacaccaccaatcaacttgtcggtgagatgaaatgtcaggctcaggat
gcctcagtcaaggaagctcaactgaaaactgagctgaacaaacttaaagtagaaattcca
caagtgaatgttgtccaacaaatagaagaaatgataaaacaaaagagtgcagaaagagaa
cagatattgaaggaacctagaagaacatgcaccatccccatggctcctaaaggaaaccct
gatgtactcggaaagattgcacatttggcacaaattgaaaacagtgaggcagcaaaggtc
atctcctggcacttagcaagtgatatggactgtgtggttactttgaccacagattcagca
cgtcaaatctttaaggacacacagggacggcagcaagtgctcccacttgactcaatctac
atgaagaacctcccacagtggaacagacctttaccacatctaaggaatgggaaatgtcac
tttgaacccatggggaaccctgtgtttgctcgagatctccttattttcccagaaaatgtg
aaacactgtcagacagtctttggaatgctcctgggagacaccattattcttgatgacttg
gatgcttcaaacagttataggaaagaggttgttaaaataacacattgtcctaccttactg
acaaggcaaggggaccgtattcgcagcaatggaaagtttggaggtcttcagaacaaagcg
ccttcaatggacaagcttaggggaatggtttttggatcaccactgccacccatgtactat
actttggggacacaaattgatctccttcagcagtaccgcactgcagtaattaaacttggt
aatgtgaaagaagaactagatctgcagctgaactacctccattcaccagaaatgcttcag
aaacgagatgaacttttctcacaagagaaacaactcaaagatattgaaaaaaaactaggt
atgacaccagcaaggggaaccaatggctctggattcaaaccaaaagtattggacatggct
gatgattctccaatctgtacaaaaagaacaagacgagacaattcacgaaaaacattttgc
tcagatgagtggatttcccctccgctgaaaaaactgcatatgacttctgaatcagaaacc
agtgacagtgtagtgaaaaagaagagaaagacttaa
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integrated database retrieval system
