KEGG   Acipenser ruthenus (sterlet): 117409991
Entry
117409991         CDS       T07327                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3F-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117409991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arut03019]
    117409991
Messenger RNA biogenesis [BR:arut03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117409991
SSDB
Motif
Pfam: NAD1 APOBEC2 NAD2 APOBEC_N SNAD4 APOBEC3 APOBEC4_like APOBEC4 APOBEC1 APOBEC_C dCMP_cyt_deam_1 Toxin-deaminase MafB19-deam Bd3614-deam Cys_Met_Meta_PP
Other DBs
NCBI-GeneID: 117409991
NCBI-ProteinID: XP_034769285
LinkDB
Position
45:3182857..3190980
AA seq 336 aa
MNQMSAFVFTEQFDSSKYPKETWLCQFLSVNSRSETKVYKNSTEHADVICLQENKVAIKA
ADQYEITWYISWSPCDECALKIIEFLEQHPNVKLNIFVSRLYYQDLESHRDGLRALSRQK
RIGLKVMTKDDFNDCFDRFVGEGNGFQSWGDLAGKSATYAATLKDITTQIFHRNPVLMLL
DNTVFCQLFFPPVLFIKMKKISSCDFTKQFKNLRYATGLKETWLCQILKEHDGAENLKVH
RNRKRHAEMICLRQNESAIQAEITWYVSWSPCDTCAPEIITFMEKHPNVKLNIFASRLYY
GNNNIISRTVLIALLMAVDLDPGESLKQIQNSMLKC
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgaatcaaatgtctgcttttgttttcacggaacagttcgatagctcaaaatacccaaaa
gaaacgtggctgtgccaatttttgagtgtgaatagcaggtcggagacaaaggtgtacaaa
aatagtacggaacatgcagatgtgatctgcttgcaggaaaacaaagttgcaattaaagct
gctgatcaatatgaaataacctggtacatttcctggagcccctgcgatgaatgcgcatta
aaaataattgaatttctggagcagcaccccaatgtgaagctgaatatcttcgtttcccgg
ctctactaccaggatttagaatctcatagggatggcttaagagctctttcacgacaaaaa
agaattggcttaaaagtgatgacgaaagatgatttcaatgactgttttgatcgctttgtt
ggagaaggaaatggatttcagagctggggagaccttgctgggaaatcagcgacatatgcg
gctacactgaaagatataactacacagatatttcacaggaatccagttttgatgttacta
gacaatactgttttttgtcaacttttttttcccccagtcctttttatcaaaatgaaaaaa
atctccagttgtgatttcactaaacagtttaaaaacctgcgatacgccacaggcctaaag
gaaacgtggctgtgccagattctgaaggagcacgacggggctgagaatttaaaggtgcac
agaaataggaaacgacatgcagaaatgatctgcttgcggcaaaacgaatctgcaattcaa
gctgaaataacctggtacgtttcctggagcccctgtgatacatgcgcacctgaaataatt
acatttatggagaagcaccccaatgtgaagctgaatatatttgcctcccggctgtattat
gggaataacaacattatttccaggactgttttgatcgctttgttaatggcagtggattta
gaccctggcgagagcttgaagcaaattcaaaactctatgctgaaatgctga

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