Acipenser ruthenus (sterlet): 117418486
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Entry
117418486 CDS
T07327
Name
(RefSeq) protocadherin-15-like isoform X1
KO
K16500
protocadherin-15
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
arut03037
]
117418486
04515 Cell adhesion molecules [BR:
arut04515
]
117418486
Cilium and associated proteins [BR:
arut03037
]
Primary cilia and associated proteins
USH complex and associated proteins
117418486
Cell adhesion molecules [BR:
arut04515
]
Cadherins
Protocadherins
117418486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
PTX3_N
DUF7807
Motif
Other DBs
NCBI-GeneID:
117418486
NCBI-ProteinID:
XP_033887485
LinkDB
All DBs
Position
13:complement(13394746..13645758)
Genome browser
AA seq
1917 aa
AA seq
DB search
MRERSWLFKWLGIGIGIFSFVTNSMSQDSTEDWQYEECKLARSGPPATIVAIDEESQNGT
LLVENMQIKGRVQGPNKTISLSLRDNYDQWVILDPVQQRLYLNSTGRVLDRDPPSSIHSI
VVQVQCTNELVGTVIFHEVRIVVRDRNDNPPTFQQPRYYVAINELTPVGTTIFTGFSGNN
GAADIDDGPNGQIEYIIQYNPNDPTSNATFHILLTLSGTVILQERLNYEEKTRYFVIVQA
NDRAPNPNDRRTSTTTLTVDVLDGDDLGPMFLPCRLVNNTRDCHPLVYRASILELTDPTR
INPVNVTPTIQAVDQDRNIQPPSDRPGILYSILVGTPENYINYFSLNQTTAELRLLKPVS
RDLYQKFDLVIKAEQDNGHPLPAFANLHVEVLDENNQAPYFEFSTYQGYIIESAPVGTTI
SNSGNLTAPLNIIALDNDIEELALGARPTKDPMVRISLNDYNTVFTVTQTGIVRYLTLLQ
PVDRERQQTYTLTMIASDGVQESTPVAVNILVIDANDKTPTFSNISYSVNVYTDMQPGEA
VLRLTALDADEGLNGQITYEILAGAQGDFIINNRTGLITVAPGVNLIIGRSYALTVKASD
NAPISQRRSSITTVYVEVLPPNNQSPPRFPQFMYSLEVSEAMRTGAILLNLQATDREGDP
ITYRIQNGDPQRVFNLTKNAGLVLGKPLDRESTDRYILIVTASDGRPDGTSTTTVNIVVT
DVNDNDPVFDPFLPKNFTVQEEEVNAFVGQVKATDPDAGVNGQVWYSLVNFNGVFRINSN
GSIYTAVALDRETKSQYDLIVEASDGAVDPRRSTITVSVRVLDIDDNSPVFSQASYTVNL
PENSPVGTIILNLKAKDADLESNVTYHIRTQEARQLFSVNSVTGDLSVLQTLDFETLSAA
GATYTFIVEALDSSGCMPPGLATVTVKIMDMNDYSPVFRQALYRGMVAPNAVKGTVITTV
SAEDLDPPGTAASRIRYRLDLDKFPYSGSIFDVEVDTGRVITRVNLNEEPNTTFKLVVIA
SDDGEPVKFNSTLVEITVLQPSVIPIFTQEEYRPPPVSENAPIGTRVGVILAAAINQTIL
YSIVAGNEDDKFVLDNSTGVISTKKLLDYETAVSYVLRVQADSMHVVRSNLRVPSKTNTA
KVFIEVQDENDHPPVFTKTLYLGGVAEDAKTFTSVLTVKALDKDTGNYSAMQYRLIIPPS
NNGKDGFVIEAYTGIIKSAIIFRNLRRSYFKFEVIATDDYGAGLSSSAQVVISVVNQLDM
QVVVSNVPPTLVEQNKEQLIGILERYVQDQVPGAKVVVESIGARRFGDGFSEEDYSKSDL
MVYAIDPLTNRAISRQELFKFLDGKLLDINKEFQPYLGQGGRILEIRTPDIVASVKKAAQ
VVGYTEGALLALAVIIILCCIPAIFIVMVTYKQFKERQAECAKTARIQMALPAGKPAGGA
ANNLYEELGDNTMQQLFLLYHFQQSRGKKSVLEEGDRQRLISTCATRAISAHKKSSVNGS
LYNKLPKSASNITFLSDENPLTTNNPLYDESILNSPESGGLSRKGKALFGRPSSQRLGLK
DSLLKLPSGGPSHAWTLPSRMHRSMYDALSRQVVMDPVQWELELLRAELRESKDQWSQVC
SPRCKNAETKLTVKEQARQFEQQALQEIKQLQACNLKGQQSPLPSKCSHTEMQGSMLDLA
PDHLLSLPGLHSRPTLSMSPVPQLDFPAPSIVITLSDGSPPPARKPTPPISQKSSFANST
YRALGPNKVEAEIIPEPPNVPPPPPPPPYFSPPFPHSLPPPPPPPPLPPSLLTSSTLPVS
PLFLPPFPSVSSLRPVSLSQKGRAPSPPQATQPSVPRKELKGILKSIQNLAEIEKSVANM
YSQIDHKVPKNVPRPKVTIEPEAQKTETSEDQSQSNGSLNCIIEELEKRFPSQSTIL
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atgcgagagaggtcgtggctcttcaaatggctgggaatagggataggcatcttttctttc
gtcaccaacagcatgtcgcaagatagcacagaagattggcaatatgaggagtgcaaattg
gccaggtcaggccctccagctacaatagttgccattgatgaagaaagtcaaaatggtact
ctcctggtggagaatatgcagataaagggaagagtacaaggccccaataagacaatttca
ttatctctgagggacaactatgatcagtgggtgatcctggatcctgtacaacaaaggctt
tatctcaacagcactggtcgagttctggatagagatcctccctcatctatccactccatt
gtggtgcaggtccaatgtaccaatgagctggtaggcactgtcattttccacgaagtgcgg
attgtggtgagagatcgaaatgacaatccccctaccttccagcaaccacgctactatgta
gcaattaatgagttgacaccagttggaaccaccatcttcacaggattttctggaaataat
ggtgcggctgacatagatgatggacccaatggccaaattgaatatataattcagtataac
ccgaatgatccaacatctaacgcgacttttcacattctactcactttgtcaggaacggta
attctccaagagagactaaattatgaagaaaaaacacgctactttgtaattgttcaagcc
aacgaccgtgctccgaatccaaatgacagaaggactagcactacaacgctgacagttgat
gtgctggatggggacgatctggggcctatgttcctgccatgcagacttgtgaacaacaca
agggactgtcatcctctggtttacagagccagtatcctggagctcactgacccaaccaga
ataaacccagttaatgtcactccgactattcaagctgttgatcaagacagaaacatccag
ccaccctctgatcgaccaggcattctttactccatccttgtcggaacccctgagaattac
ataaactatttcagtttaaatcagacaaccgcagaacttcgcctcctcaagccagtcagc
agggatttataccagaaatttgatttggttattaaggcagaacaagacaatggacatcca
ctcccagcatttgctaatttacatgtagaggtcctcgatgaaaataatcaagccccatac
tttgaattttcgacttatcaagggtatatcattgagtcagccccggtgggcacaacaatc
tcaaacagtgggaatcttacagcaccgcttaacataatcgctttggataacgacatagaa
gagcttgcactaggtgccaggcctacaaaagaccccatggttcgaatttccttaaatgac
tacaacacagtttttaccgtgactcagactggaatagtccgctacttgacattgctgcag
ccagtggatcgagaacgtcagcagacctacactttaactatgatagcctctgatggagtc
caggaaagtactccagtcgcagttaatatcctggtgatcgatgccaacgataaaactcca
accttctccaacatctcctacagtgtaaatgtttacacagacatgcaaccgggagaggct
gtcttacggctcacagctttggatgctgatgaaggtttgaatgggcaaatcacctatgaa
attcttgctggagctcagggagatttcatcattaataacaggaccggcctgatcactgtg
gctcctggtgtcaatttgatcatcgggcgctcttatgcccttactgtcaaagcatcagac
aacgcacctatttctcagaggaggagctccataactactgtctatgttgaggtgctacca
ccaaacaatcagagccccccgagattcccacagttcatgtacagccttgaagtcagtgaa
gccatgagaactggagccattttactgaacttgcaggccacggaccgtgaaggtgatcct
ataacttatcgtatccaaaatggtgatcctcaacgcgtgtttaacctcacaaaaaatgct
ggactagtcctaggaaagcccttggacagagagagtacagatcgatacattctgattgtc
acagcgtcagatggcagacctgacgggacctctaccactactgtgaatatcgttgtcact
gatgtcaatgataacgatcccgtttttgatccatttctgcccaaaaacttcacggtccag
gaagaggaggtgaatgcatttgtaggacaagtaaaggcaactgatccagatgcgggtgtg
aatgggcaggtctggtacagtttggtgaacttcaatggcgtttttagaatcaattcaaac
ggcagcatttacacagctgtggcactggaccgagaaacaaaaagtcaatatgatctgatt
gtggaggcctctgatggagcagtagaccctcgccggtccacaattacagtatcggttaga
gtgctggatattgatgacaacagcccggtgttctcgcaggcctcatacacagtcaattta
ccagaaaacagtcctgtgggaacaatcattctaaacttgaaggcaaaggatgctgacctt
gaatccaatgtcacttaccacataagaacacaagaggcaagacagctgttttcagtgaac
tctgtgacaggagatttgtcagtgttacaaactttagactttgaaaccctttctgcagca
ggggcaacttacacctttatagtggaggccttggacagcagtggctgcatgccaccaggc
cttgctactgtgacagtgaaaataatggatatgaatgattattcccctgtatttaggcaa
gctctctataggggaatggtggcaccaaatgcagtcaagggcactgtcatcacaactgta
tcagcagaagatctagatcctccgggcacggcagccagcaggatcagatacagattggat
ctggacaagtttccctacagtggcagtatctttgatgtggaggtagatactggaagagta
ataacacgggtcaacctcaatgaagaacccaatacgacatttaagctggtggttattgcc
agtgatgatggggagcctgtgaagttcaacagtactctggttgaaataacagttctgcag
ccttcagtgattccaatcttcacacaagaggaatataggcctcctccagttagtgaaaat
gctcccataggaacgagggtgggtgttatacttgcagccgcaatcaatcaaaccattctg
tattccattgttgctggaaatgaagacgataaatttgtccttgataatagcacaggagtc
atctctactaagaagcttttagactacgagaccgctgtgagctatgtacttcgagtccaa
gcagactccatgcatgtcgtaagatccaacctacgagttccttcaaaaacaaacacagca
aaggtgttcatcgaggttcaagatgagaatgaccaccctcctgtatttacgaaaacactt
tacctgggcggtgtggcagaagatgccaaaacatttacttcagtattgacagtaaaggcc
ttggacaaggacactgggaattacagtgcaatgcagtaccggttgattataccaccttca
aacaatggaaaagacgggtttgtgattgaggcatacacaggaatcatcaaatctgcaatc
atattccgaaacctcaggaggtcctattttaagtttgaagtgattgcgaccgatgactat
ggagcgggactgagcagtagtgcccaagttgttatctctgtggtcaatcaactggatatg
caagtggttgtttccaatgttcctcctactcttgtggaacagaacaaagagcagcttatc
gggattttggagcgttatgtacaggatcaggttccaggggctaaagttgttgtggagtcc
atcggagcacggagattcggtgatggattttcagaagaggattattccaaatcagatctg
atggtctatgcaatcgaccctttaaccaaccgggccatatcaagacaagaactttttaaa
ttcctcgatgggaagctgctggatatcaataaagaattccagccctacctcggccaggga
ggtcgtattctggaaatccgaacccccgacattgtggcgagtgttaagaaggcagctcag
gtcgtaggttacacagagggtgctttactggccctggcagtgatcatcattctgtgctgc
atccctgctatttttatagtcatggtcacctacaaacagtttaaggaacgacaggcagag
tgtgcaaagacagcaagaatccaaatggcattgccagcaggcaaaccggccgggggtgct
gccaataatctgtatgaagaacttggtgacaataccatgcagcaactttttcttctctac
cattttcaacaaagcaggggaaaaaaatctgttttagaagagggagatcggcaaagactc
ataagcacgtgtgcaacacgtgccatttcagctcacaagaaatccagtgtcaatggatca
ttgtacaacaaactcccaaagtctgctagtaacattacattcttgtcagatgaaaaccca
ttgactaccaataaccctttgtatgacgaaagcattctcaacagcccagagagtggtggc
ctctcccgaaaaggaaaagccttatttggcagaccttcttcccagagactgggcttgaaa
gattcccttctaaagttgccttctggaggtccttcccatgcatggacattgccatcacgc
atgcacaggtcaatgtatgatgctttaagtagacaagttgttatggatccagttcagtgg
gagctggagctgcttagagcagagctaagagaaagtaaagatcagtggagccaggtttgt
agcccaagatgtaaaaatgctgaaacaaagttaacagttaaagaacaggcgaggcagttt
gagcaacaggccttgcaggaaattaagcaacttcaagcttgcaatttgaaaggacagcag
tcccctttgccatcgaaatgcagccatactgaaatgcagggaagcatgctagatttagct
cccgatcacttgctttctttaccaggtctccattcccgtcctactttatctatgtctcct
gttccacaattggactttcctgctccttctattgtcattactctttctgatggctcgcca
cccccagctcgcaaaccaactccccctatatcccagaagtccagctttgcaaactccact
tatcgcgcattgggaccaaacaaggtagaagccgagatcattccagaacctcctaatgtc
cccccacctccccctccacctccttatttctctccaccatttccccattctctgcctcct
ccacctcctcccccaccactcccaccatctttattaacttcttctactctgcctgtctct
ccattgttcttgccaccttttccctctgtgtcctctctacggccagtgtccttatctcag
aagggacgcgcaccctctccccctcaggcaacccaaccttcagtccccagaaaggaactg
aaggggattctcaaaagcatccagaacttagcagaaatagaaaaatctgttgccaatatg
tacagtcaaatagaccacaaggtaccgaagaatgtccccaggccaaaagtaactatcgag
cctgaggcacaaaagactgaaacttctgaggatcaaagccagtcaaatggcagcttgaac
tgtatcattgaggagcttgaaaaacgctttccatctcagtcaactatcttatag
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integrated database retrieval system
