Acipenser ruthenus (sterlet): 117421302
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Entry
117421302 CDS
T07327
Symbol
thbs1b
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1
KO
K16857
thrombospondin 1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04115
p53 signaling pathway
arut04145
Phagosome
arut04148
Efferocytosis
arut04350
TGF-beta signaling pathway
arut04510
Focal adhesion
arut04512
ECM-receptor interaction
arut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117421302 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117421302 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117421302 (thbs1b)
04148 Efferocytosis
117421302 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
117421302 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117421302 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117421302 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117421302 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117421302 (thbs1b)
Membrane trafficking [BR:
arut04131
]
Endocytosis
Phagocytosis
Opsonins
117421302 (thbs1b)
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117421302 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
TSP1_ADAMTS
EGF_3
TSP1_CFP_C
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
117421302
NCBI-ProteinID:
XP_034783543
LinkDB
All DBs
Position
16:complement(18412815..18429144)
Genome browser
AA seq
1174 aa
AA seq
DB search
MTLSEGLFLLLMLGICEASRVAETGEDNSVFDLFEVSRVARKNNGVALVKGPDPYSPAYK
ILNADLIPPVPETPFRDLLDAIHAEKGFLFLATLKQSKRSRGSLLTIEKLDGSGQVFEIV
SNGNAGTMDLVYTIEDKQHVVSLEDAELATGNWKNITLLVQEDRVQLYVGCDEIDTVEMD
ASIHRILTQELPGTARLRVGKGAIKDKFQGLLSTFYLSFKTTLEAILRNKGCSRSITDTI
TLDNPVNGSSPAIRTDYIGHKTKDIQTVCGFSCDELANMFKELQGLRVIVTQLVDKVHKV
TEQNELIQKTIKIRPGSCIHNGIFHNNKEEWTVDGCTECTCQNSATVCREISCPLMPCAN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRISSSCEGTSVQ
TRDCYIQECDKRFKQDGHWSHWSPWSSCSVSCGAGVITRIRLCNSPTPQMGGKDCVGEGR
QTEKCQKSPCPINGKWGPWSMWDTCTVTCGGGVQKRKRLCNNPPAKYGGKDCIGEPKESQ
LCNKDDCPVDGCLSNPCFAGSKCTSFPDGSWKCGPCPTGYKGNGVQCKDIDECKEVPNAC
FVFNDVHRCENTDPGYNCLPCPPRYSGEQPYGRGVEDATAKKQVCKPRNPCNDGTHDCNA
NARCIYLGHYTEPMFRCECKPGYAGNGHICGEDTDLDGWPNEELVCVENATYHCKKDNCP
NLPNSGQEDYDKDGTGDACDSDDDNDSVPDDRDNCQFIXLVLVMTLHRDDVRDRICDNCP
LFVFNPDCQLITDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNC
PLEHNPDQVDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDH
DDDNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVPDIYDVCPENFEISETD
FRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINT
ERDDDYAGFVFGYQSSARFYVVMWKQITQTYWSDSPTKAQGYSGLSIKVVNSTTGPGEHL
RNALWHTGNTSGQVRTLWHDPRNVGWKDFTAYRWHLTHRPKTGHIRVVMYEGKRIMADSG
AIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatctgaagggctgtttttgctcctaatgctgggcatctgtgaagcaagtcga
gttgcagaaactggagaagacaatagtgtatttgacctattcgaagtcagccgagtggca
cgaaaaaacaacggcgtcgcactcgtgaaaggaccagatccatacagccccgcttacaag
attctcaacgcggacctgattcccccggttcccgagacccccttccgggacctgctagat
gccattcacgcggagaaagggtttctgttccttgctaccctgaagcaatccaagaggagc
cggggcagcctgctgaccattgagaagctcgacgggtccggtcaggtcttcgagatcgtc
tcgaatggcaatgcgggcaccatggatctggtttataccatcgaggacaagcagcacgtc
gtgtcgctggaagatgcggagctagcgaccggtaactggaagaacatcacgctgttagtg
caggaggaccgggtacagctgtacgtgggctgcgatgagattgacacagtcgagatggac
gcttccatccacagaatcctcacccaggagttgcctggcactgcccgactcagggtggga
aaaggggcgatcaaggacaagttccagggtcttttgtccacattctacctttcgtttaaa
accacattggaagcaattctgagaaacaaagggtgctccagatctatcactgacactatc
actttggacaaccccgttaatggatccagcccggctatcagaacagattacatcgggcac
aaaaccaaagacattcagactgtgtgcggcttctcctgtgacgagctggccaacatgttc
aaggagctgcagggtctcagagtcatcgtcacccagctggtggataaagtgcacaaagtg
actgaacaaaatgaactcatccagaaaacaattaaaatccgaccaggtagctgcatccac
aatggcatcttccacaacaacaaggaggagtggacagtggacggctgcaccgaatgcacc
tgccagaactctgctacagtgtgccgtgagatctcctgccccctcatgccctgtgccaac
gccacagttccagacggagagtgttgccctcgctgcggcaccccgagtgactctgcagag
gacggctggtccccttggtctgaatggactcattgttcagtgtcctgtggaagaggtatc
cagcagaggggccgctcctgtgatcgtatcagcagcagctgcgagggcacctccgtgcag
acccgggactgctacatccaggaatgcgataagagattcaaacaagacggacactggagc
cactggtccccgtggtcgtcctgctcagtttcctgcggcgctggagtcattacccgaatc
cgcctgtgcaactcacccaccccccagatgggagggaaggactgtgtgggagagggcagg
cagaccgagaagtgtcagaaatcaccatgtccaatcaatggtaaatggggtccctggtcg
atgtgggatacctgcaccgtcacctgcggaggaggggttcagaagcgcaagcgtctttgc
aataacccacccgctaagtatgggggcaaagactgcattggggagcccaaagagtcccag
ctctgcaacaaggacgactgccctgtcgatggttgcctgtccaacccctgcttcgctggg
tctaagtgcaccagcttccccgacggttcctggaaatgcgggccctgcccaactggctac
aaaggcaatggagttcagtgcaaagatattgatgagtgtaaagaggtgcccaacgcctgc
tttgtgttcaacgacgtccacagatgtgaaaacacagatcctggatacaactgtctgcct
tgcccgccacgctattctggggagcagccctacggccgaggagtggaggatgccacagct
aaaaagcaggtctgcaagcctcgtaacccctgcaatgacggaacccacgactgcaatgcg
aacgcccgctgtatctacctggggcactacacagagcccatgttccgctgtgagtgcaag
cccggctatgctgggaacggacacatctgcggagaggacaccgacctggacggctggccc
aacgaggagcttgtgtgtgtggaaaacgccacctaccactgcaagaaggacaactgcccg
aaccttcccaactctggtcaggaagattacgacaaggacggaaccggcgatgcctgtgat
agcgacgacgataatgatagtgtcccagatgacagggacaactgccagttcatctaatta
gttcttgttatgacattacaccgtgacgatgttcgtgatcgcatatgtgataactgcccc
ctgtttgtttttaaccctgactgccagctgatcaccgacagcaacggggagggagatgca
tgtgccgtggacatcgatggagatggtattctgaatgagaaggataactgcccctacgtt
tacaatgttgaccagagagatacagatttggacggtgtgggagatcagtgtgataactgc
ccactggagcacaaccctgaccaggtggattctgactctgaccgagttggggacaagtgt
gacagcaaccaggacattgatgaagatggacaccagaacaacctggacaattgtccctac
atccccaacgccaaccaggccgaccacgacaaagacgggaagggtgatgcctgcgaccac
gatgatgacaatgacggcatcccagacgacaaagacaactgcagactggctttcaaccct
gaccagctcgactctgatggagatggacgcggagatatctgcaaagacgactttgaccaa
gataacgtgcccgatatctacgacgtctgcccagagaactttgaaatcagtgagaccgac
ttccgcaaattccagatggtacccctggaccccaagggaacctcccagattgatcctaac
tgggtggtgcggcatcagggcaaggagctggtgcaaaccgtcaactgcgaccctggcatt
gctgtcggttttgatgaattcaacgcagtggatttcagcggcacctttttcatcaacacc
gagcgagatgacgactacgctggcttcgtgtttggctaccagtccagcgctcgcttctac
gtggtcatgtggaagcagatcacacagacctactggtccgactctcccaccaaagctcag
ggatactcagggctgtccattaaggtggtcaactccaccaccggtccaggggagcatctg
cgtaacgcactgtggcatacgggcaacacttctggacaggtgcgcaccttgtggcacgac
cctcgcaatgttggctggaaagacttcacagcctacagatggcaccttacccacaggcca
aagactgggcacatcagagttgtgatgtacgagggcaagagaataatggcagattctgga
gccatctatgacaagacctatgccggtggtcgattgggtctgtttgtgttttctcaagaa
atggtttacttctcagacctcaagtatgaatgcagagatgcataa
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