Arthrobacter sp. ATCC 21022: AUT26_06280
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Entry
AUT26_06280 CDS
T04477
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
arz
Arthrobacter sp. ATCC 21022
Pathway
arz03030
DNA replication
arz03410
Base excision repair
arz03420
Nucleotide excision repair
arz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
arz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUT26_06280
03410 Base excision repair
AUT26_06280
03420 Nucleotide excision repair
AUT26_06280
03430 Mismatch repair
AUT26_06280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
arz03032
]
AUT26_06280
03400 DNA repair and recombination proteins [BR:
arz03400
]
AUT26_06280
Enzymes [BR:
arz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUT26_06280
DNA replication proteins [BR:
arz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUT26_06280
DNA repair and recombination proteins [BR:
arz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUT26_06280
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUT26_06280
MMR (mismatch excision repair)
DNA ligase
AUT26_06280
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUT26_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMB39854
LinkDB
All DBs
Position
1400418..1402721
Genome browser
AA seq
767 aa
AA seq
DB search
MSTPENPDRVSTTSMATAAVAVEEGAPPSENLREEYQELVDLVRKYRYAYYQEDAPTVSD
AEYDLLYRRLEELEALHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLDDVFSLDELE
AWVRKVEASVAKLGDRVPPISWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHN
VLTIKEIPRQLSGSGYPSEVEIRGEVFIPSKAFAEFNDSLVAAGKAPLANPRNAAAGSLR
QKDPAETAKRPLSMFVHGIGAREGLDAASQSETYKLLGEWGLPVSPYSKVLDSYDGVLEF
IAHYGEHRHGLLHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIMV
NVGRTGRVTPFGLMEPVKVSGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIVG
PVLALRDKQDPPVREFVMPTECPSCGTPLAPSKEGDVDIRCPNGKSCPSQLRERVFHVAS
RGAFDIEALGWEAAIALTQPAEPEIPPLTSEAALFDLTREDLANVMIRREKKSKGVGTGQ
YELVPYFYTKATAKTPSKPTATTEKLFTELEKAKKQPLWRVLVALSIRHVGPTASRALAT
NFGSMDAIRNATEEQLAHVDGVGPTIAAALKEWFAVDWHNEIVDRWAAAGVRMEDDRDTA
TPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKAAGSVSKNTSYLVAGESAGTKLDKAE
QLGIPVLDEDGFRELLANGPAAPEGQPATSEGQENVDEAAAREGESE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaccagagaatccagatcgggtcagcaccacatccatggccacagccgccgtc
gccgtagaggagggtgcgccgccgtcggaaaacctccgggaagagtaccaggaactggtt
gacctggtccggaagtaccggtacgcgtattaccaagaagacgctcccactgtttccgac
gctgaatatgacctcctgtaccggcgcctggaggaattggaagccctccatccggagctc
gtcgcgaatgattcacccacccaggaagtgggcggtgaggtctccgcggcttttgccgcc
gtcgagcacctccaacggatgtacagcctcgatgacgtgttctcgctcgacgagctggag
gcctgggtgcggaaggtcgaggcgtcggtggccaagctcggggacagggtcccgccgatc
tcgtggttgaccgagttgaagatcgatggcctggccgtgaacctgctgtaccgggacggc
aagctggtgcgcgctgctacccgcggcgatggcaccacgggtgaagacatcacccataac
gtcctgaccatcaaggagatcccgcggcagctcagcggctcgggctatccgtccgaagtt
gagatccgcggcgaggtcttcattccgtccaaggctttcgcggaattcaacgactcgttg
gtggcagcgggcaaggcgccgctggccaacccccgcaacgccgccgcgggttcgctccgg
caaaaagatccggcggagaccgccaagcgtcccctcagcatgttcgtccacggcatcggg
gcgcgtgaagggctggatgcggccagccagtcggagacctacaagctcctgggcgaatgg
ggactcccggtcagtccctactcgaaggtcctggactcttacgacggcgtcctggaattc
attgcccactacggcgaacaccgccacggcctcctgcacgagatcgacggcatcgtggtg
aagatcgatgacttcgccacccaacgcgcactcggctacacctcccgcgtgccgaggtgg
gccgccgcgtacaagtacccgccggaagaggtccacaccaaactgctggacatcatggtc
aacgtcggccggaccggacgtgtcactccgttcgggttgatggagcccgtcaaggtgtcc
ggctccaccgtgggcatggctacgctgcacaaccaggacgtcgtcaaagccaaaggcgtg
atgatcggcgacatcgtgattcttcgcaaagccggtgacgtcatccccgaaattgtcggt
ccggtactggcgctccgcgataagcaggatccgcccgtccgcgaattcgtcatgcccacc
gaatgcccttcctgcggcactccgctcgcgccttccaaggagggcgacgtggacatccgc
tgccccaatggaaagtcctgcccttcccagttgcgtgagcgggtcttccacgtggccagc
cgtggcgccttcgatatcgaggccctcggctgggaagcggctatcgctttgacccagccc
gcagaaccggagattcccccgctgaccagcgaggccgcgctgtttgacttgacccgcgaa
gatctggcaaacgtgatgatccgccgcgagaagaaatccaagggcgtcggcacaggccag
tacgaactcgttccctacttctatacgaaagccacggccaagacgccgtcaaagcccact
gccaccacggagaagcttttcacggagctggagaaagccaagaagcagcccctgtggcgg
gtgcttgtagcgttgtccatccgccacgtcggtcccaccgcctcgcgggcactggcaacc
aacttcggaagcatggatgccattcggaatgcgaccgaggaacaactggcccatgtggac
ggcgtcggaccgaccattgcggctgcccttaaggaatggttcgcggttgactggcacaac
gagatcgtggacaggtgggctgccgccggcgttcggatggaggatgaccgggatacggct
actccgcgcacgcttgaaggactgaccgtggtggtcacgggaaccctgccgaacttcagc
cgggatgaggccaaggaagccatcatcatccgtggtggcaaggcggcaggctcggtatcg
aagaacaccagctatctggtggccggggaaagcgctggtaccaagctggacaaagcggaa
cagctcgggatcccggtgttggatgaggacggattccgtgagctcctggccaatgggcca
gctgcgccggaaggtcagcccgccacgtctgaaggccaggagaacgtcgatgaagctgcc
gcgcgggaaggggaatccgaatga
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