Aeromonas salmonicida subsp. salmonicida A449: ASA_1220
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Entry
ASA_1220 CDS
T00500
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03030
DNA replication
asa03410
Base excision repair
asa03420
Nucleotide excision repair
asa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ASA_1220 (ligA)
03410 Base excision repair
ASA_1220 (ligA)
03420 Nucleotide excision repair
ASA_1220 (ligA)
03430 Mismatch repair
ASA_1220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asa03032
]
ASA_1220 (ligA)
03400 DNA repair and recombination proteins [BR:
asa03400
]
ASA_1220 (ligA)
Enzymes [BR:
asa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ASA_1220 (ligA)
DNA replication proteins [BR:
asa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ASA_1220 (ligA)
DNA repair and recombination proteins [BR:
asa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ASA_1220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ASA_1220 (ligA)
MMR (mismatch excision repair)
DNA ligase
ASA_1220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASA_1220 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABO89328
UniProt:
A4SKA6
LinkDB
All DBs
Position
1264964..1266958
Genome browser
AA seq
664 aa
AA seq
DB search
MSETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPSV
RVGGQPLTAFRQVRHEIPMLSLDNVFSSEELQAFEQRMKDRLKREISFTFCCEPKLDGLA
VSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLSLRGSDWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLNFYAYGVGVGGDQLGDSHFG
RLCQLKAWGLPMSPEVKLKEGAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFPTQCPVCGSALERLEGE
VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLAAGIHWPAIEKKEASEQPFAGKTFVLTG
TLNLLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEEQLQA
ALQS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccctctcccgccaccgtcaactgtgtgatctgctgaccgaatacggtcat
cagtactatgtgctggataaccccaccgtcccagacgccgaatacgatcgcctgatgcgg
gaactgatcgcgatcgagagcgagcacccagaactgaaaacctctgcctccccgagtgtt
cgggttggtggtcaacccttgactgccttcaggcaggtacgtcacgagatccccatgctg
agcctggacaacgtcttcagcagcgaagagttgcaggcgttcgagcagcgcatgaaggat
cgcctgaagcgggagataagcttcaccttctgctgtgagcccaagctggacggtctggcg
gtgagcctgctctatgtggatggtcagctggtgcaggccgctacccggggtgatggcgca
accggtgaggagatcaccgagaacgtgcgcaccatcaaggcgatcccgctctccctgcgc
ggcagcgactggcccgcccggctggaagtccgtggcgaggtatttatgcccaaggccggt
ttcgaggcgatgaatgccaaagcactggccgctggcgagaaggtgttcgtcaacccgcgc
aatgccgcggctggcagcctgcgtcagctcgattcccgcatcaccgccagtcgcccgctg
aacttctacgcctatggcgtcggggtgggcggcgatcagctgggggattcccatttcggc
cgcttgtgtcagctcaaagcctggggcctgcccatgagcccggaggtgaaactcaaggaa
ggcgcggccggatgccaggcctttcacgacgatattctggcccgccgcggcgagctggcc
tacgagatagacggcgtggtttacaaggttgacgccatccccctgcaagaagagctgggc
tttgtggcccgcgctccccgttgggccactgcccacaagtttccggcccaggaggagatg
acactgctcgagaatgtcgagtttcaggtgggtcgtaccggtgccgtgactccggttgcc
aagcttaaacccgtgtttgtcggtggcgttaccatctccaacgccactttgcacaatgcc
gacgagattgaacgccttggtgtcatgatcggcgataccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatagtcgccgtggtggaggcgcagcgccccgttgatgcccgcgag
atcctctttcctacccaatgtccggtttgtggctcggcgctggagcggctggaaggggaa
gtggtcacccgctgctctggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcccgccgtgccatggacgtggatggcctcggcgacaagatagtggagcag
ctggtggacaaggggctggtgaagaccccggccgatctgttcagcctcaacgccattcag
ctggccgggctcgagcggatggggcaaaaatcggccctcaatctagtggcggccatcgat
gcggcgcgcagcactaccctgccccgcttcctgtttgcgttggggatccgcgaagtgggg
gaggcgacagcgctgaacctggccaaccatttcctcactctggatgccctgcgtgccgcc
tcggtggagcaattgctggaagtggccgacgtgggggacatagtggccaagcacgtctac
tacttcctgcgccagccccacaacattgaggtgctggccgctggtatccactggccggcc
atcgagaagaaggaagcaagcgagcagccgtttgccggcaagacctttgtgctgaccggc
accctcaacctgctctctcgcaacgatgccaaggcggcgctgcaggcgttgggggccaag
gtagccgggtctgtgtcggccaagacagatgtgctggtggcgggggaagcggccggttcc
aagctggccaaggcccaggagctcggcatcaccatctggaccgaagagcagttacaggca
gcccttcagtcatga
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integrated database retrieval system
