Athalassotoga saccharophila: ATHSA_0921
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Entry
ATHSA_0921 CDS
T06407
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asac
Athalassotoga saccharophila
Pathway
asac03030
DNA replication
asac03410
Base excision repair
asac03420
Nucleotide excision repair
asac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATHSA_0921
03410 Base excision repair
ATHSA_0921
03420 Nucleotide excision repair
ATHSA_0921
03430 Mismatch repair
ATHSA_0921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asac03032
]
ATHSA_0921
03400 DNA repair and recombination proteins [BR:
asac03400
]
ATHSA_0921
Enzymes [BR:
asac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATHSA_0921
DNA replication proteins [BR:
asac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATHSA_0921
DNA repair and recombination proteins [BR:
asac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATHSA_0921
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATHSA_0921
MMR (mismatch excision repair)
DNA ligase
ATHSA_0921
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATHSA_0921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
HHH_8
HHH_3
GFRP
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BBJ28021
LinkDB
All DBs
Position
893097..895103
Genome browser
AA seq
668 aa
AA seq
DB search
MDEIPDEVRSKIEKLRKEIEYHNYRYYTLNDPIITDYEYDMLVKELQSLEEKYPSLKSPN
SPTQRIGSKILQGFSPVRHPSLMYSLDNIYSFEELKEFDERIKKLSDHDEIEYVCEMKID
GLSIRLKYEKGELVLAATRGDGEVGEDVTDNARTVRTIPLILSEAIDVEVRGEIYMSYTE
FKKLNLIRQHQSLPLFANPRNAAAGTLRQLDTTEVAKRHLDSFIYTLENPRKYGVKTQWE
ALEFMRKMGFKVNGESRIAKNVDEIKEYLEWCEKRREEIDYPIDGAVIKVNSFEIQENLG
FTAKAPRWAIAYKFQAEQVRTKILNVTVQVGRTGTLTPVAELQPVRLAGTTVKRASLHNF
DYVKERDIRIGDTVIIEKAGEIIPQVVKPVVEERVGNERPVEMPKTCPVCGGPVGKLDPQ
DVAIRCLNPYCPAKLEAWIENFASRKAMDIHGLGEKLIKKLIETGRVKDPSDIYTLDKEF
LSKLEKMGEKSAQKLIDQIEKSKSLPFYRLIIALGIPMVGETTARLIAKRYHDLDALQNA
KKEDLVKISGVGEKVARSIEQFFSLDKTKEMVEKLKSYGFKGSLPEQKILSDRHFVITGT
LSKPREEIKNWLLSLGAELSENVSSKTDYLVVGENPGSKLDKARKLGVKVISEKELYEMI
DQLSKTSS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatgagatccctgatgaagtgaggtcgaaaatcgagaagttgcgaaaagaaatagag
tatcacaattacaggtattacactctcaacgatcccatcataacggattacgagtacgat
atgcttgtcaaagaattgcaaagtttagaagagaaatacccttctctcaaaagtccgaac
tctccaacgcagaggatcggatcgaagatactccaaggcttctcgccggtaagacatcca
tctttgatgtacagcctcgacaacatatattcttttgaagaattgaaagagttcgacgaa
aggataaaaaaactttcagatcacgatgagatagaatacgtctgcgaaatgaagatagat
ggactttccataaggctaaagtacgaaaaaggagaacttgttcttgccgcaacgcgcggg
gatggcgaggttggagaagatgttaccgataacgcgaggactgtaaggacaatccctctc
attctctccgaggctatagatgtcgaggtgagaggagaaatatacatgtcctacaccgaa
ttcaaaaaattgaacctcataagacagcaccaatcccttcctttatttgcgaatcctcga
aatgcggcggctggtaccctaaggcaattggacacgaccgaggttgcaaaaaggcatctc
gactcatttatatacacgcttgagaatccacgaaaatacggagtaaagactcagtgggaa
gcgttagagttcatgagaaagatgggattcaaagtcaacggtgaatcgagaatcgcgaag
aatgtcgatgaaataaaggaatatttggaatggtgcgagaagagaagagaagagatagat
tatccaatagacggtgcggtcataaaggttaattccttcgaaattcaggaaaatttaggc
tttaccgccaaagcaccgcgatgggcgatagcgtacaaatttcaggcagaacaggtaaga
acaaagatactcaatgtaacagttcaagttggcagaaccggcactcttacaccggttgcc
gaacttcagcctgttcgtcttgccggtacaacggttaaaagagcctcccttcacaatttc
gattatgtgaaagaaagagacataagaatcggagacacggtgataatagaaaaagccggc
gagataattccacaggttgtaaagcccgtcgtggaagaaagagtcggaaatgaaagacca
gttgaaatgcccaagacatgtcccgtgtgcggtggtccggtcggaaagttagatcctcaa
gatgttgccataagatgtttgaacccttattgccccgccaaacttgaggcgtggatagag
aactttgcttcccgcaaggccatggacatacacggcctcggggagaaattgataaagaag
ttgatagagaccggacgggtaaaggatccatccgatatatacacgcttgacaaagaattt
ttatcaaaactcgaaaagatgggagaaaaatcggcccagaaacttatagatcaaatagaa
aaatcaaaatcgcttccattttatagactcataatagcgcttggaattccaatggtcgga
gaaacaaccgcaaggcttatagccaaaaggtatcatgatttagatgcacttcagaacgct
aaaaaagaagatctcgtgaagataagcggagtcggggagaaggtcgcaagatcgatagag
caattcttctctctggataagacaaaagagatggttgaaaaactaaaatcttacggcttt
aagggatcactgccggaacagaagatattatcagacaggcattttgtaataaccggaaca
ctttcaaagccgcgcgaggagataaaaaattggctcctttcccttggagccgaactttcc
gaaaatgtatcctcaaaaacggattatttggtggtaggtgagaatccgggatcaaaactc
gacaaagcgagaaaattaggtgttaaagtcataagtgagaaggaactttacgagatgatc
gatcaactttcgaagacgagttcatag
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