Alosa sapidissima (American shad): 121685396 Help Entry 121685396         CDS       T11137                                  Symbol slit1a Name (RefSeq) slit homolog 1a isoform X1   KO K06838   slit 1 Organism asad  Alosa sapidissima (American shad) Pathway asad04517   IgSF CAM signaling Brite KEGG Orthology (KO) [BR:asad00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     121685396 (slit1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:asad00536]     121685396 (slit1a) Glycosaminoglycan binding proteins [BR:asad00536]  Heparan sulfate / Heparin   Axon guidance molecules    121685396 (slit1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LRR_8 LRR_4 LRR_5 EGF Laminin_G_2 hEGF LRRNT LRRCT Laminin_G_1 LRR_1 LRR_9 EGF_TEN LRR_14 EGF_Teneurin EGF_3 EGF_DL_JAG Motif Other DBs NCBI-GeneID:  121685396 NCBI-ProteinID:  XP_041921836 LinkDB All DBs Position 16:complement(30587547..30691552) Genome browser AA seq 1546 aa AA seqDB search MPGKGLGGGATMGLARAGLLCMLLCGALLSGAASACPALCTCSGTTVDCHGLGLKTVPRN IPRNTERLELNGNNFTRINKNDFAGLKYLRVLQLMENQIGTIERGAFDDMKELERLRLNR NQLHQLPELLFQKNAGLSRLDLSENFIQAIPRKAFRGATDIKNLQLDKNHIACIEDGAFR ALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTVGL FTQCSSPPQLRGLNVAEIQKHEFSCSGHLESAGAPSCSLSAGSCPAMCTCSNNIVDCRGK GLTAIPANLPDNMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRS LNSLVLYGNKITELPKGVFDGLYALQLLLLNANKIHCVRANTFQDLQNLSLLSLYDNKIQ TLAKGTFASLRAIQTLHLAQNPFICDCNLKWLADYLRANPIETSGARCASPRRLANKRIG QIKSKKFRCSAKEQYFIPGTEDSRLNNECNNEPVCPPKCRCESNVVDCSNLRLTKVPEHI PASTTELRLNNNEITTLEATGVFKTLAQLKKINLSNNKITEIEDGAFEGASSVIELHLTA NQLDSVRSGMFKGLEGLRMLMLRNNRISCIHNNSFTGLYNVRLLSLYDNQLTTITPGAFD TLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFR CEEGQEDVQSCIPRPQCPSECTCLETVVRCSNKHLRALPKGIPRNVTELYLDGNQFSVVP KELSTFKYLQLVDLSNNKINSLTNSSFANMSQLTTLILSYNALRCIPNLAFSGLRSLRLL SLHGNDVSELPDGIFSDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGPH GMEGKLLLTTPAKKFECQGEVDPLVLAKCNPCLSAPCHNQGICLSDPVDIYKCTCPEGFK GKNCETALNACVSNPCANGGVCQLIGEEGDTFSCSCPSGFEGPTCQVNIDDCEDNDCENG ATCVDGVNNYTCLCLPLYTGEMCEEMEDVCAPGRSPCQHQATCLITSTGPQCVCTPGYVG DDCSMNYDDCQDHRCQNEAQCVDELNGYSCSCREGYSGQLCEVPKSPRSLCDLADCQNDA LCVERSGRAICQCLPGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDN GILLYNGDNDHIAVELYQGHVKVSYDPGNQPGNAIYSTETINDGQFHTVELVTFDQMVNL SIDGGLPTTMDSFGTVRPLNGDALLYVGGRGPLQIPPSTAGMPVDVHSAALRMWQLQNGS SFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPNAASGPVCHCQPGW SGPHCDQPATNPCQGSKCVHGKCIPLDAQSYRCECQEGYRGALCNQQGELFNPCKKLQCK HGRCQISDTGDAFCNCESGYTGDLCDRESECRGDPVRDFYQVQRGYAICQTTRMVSWVEC SGVCDTGACCASQRMKRRKYTFECSDGTSFSEEVEKTIKCGCVGCM NT seq 4641 nt NT seq  +upstreamnt  +downstreamnt atgcccgggaaaggactcggtggaggtgcgaccatggggctggccagggcagggctgctg tgcatgctgctttgtggtgccctcctgtcgggcgctgccagcgcatgccctgctctctgc acctgcagtggcaccaccgtggactgccatggactggggctcaaaaccgtgcccaggaat atacccaggaacacagagagactggaactgaatggaaataacttcacacgcatcaacaag aatgactttgctggactgaagtacctccgagtcctgcagctaatggaaaaccagattgga accatcgagcgcggggcctttgatgacatgaaggagctggagaggctacgtctgaacagg aaccaacttcaccagctcccagagctactgtttcagaagaatgccggtctttccagactg gatctgagtgagaacttcatccaggccattccgaggaaggctttccgtggggccacagac attaagaatctgcagctggacaagaatcatatcgcctgcatcgaggatggcgccttccga gctctccgaggcctggaggttttaactctgaacaacaacaacatcagcagtattcctgtc tccagtttcaaccacatgcccaagctgcggacattccgcctccactccaacaacctgaac tgcgactgccacctggcgtggcttgcccagtggctgcgccagaggcccacggtgggcctg ttcacccagtgctccagcccgccacagctccgcggcctcaacgtggccgagatccagaag cacgagttctcctgctcaggccacttggagagtgcaggcgccccgtcctgcagtctgtcg gccggttcctgccccgccatgtgcacctgcagcaacaacatcgtggattgccgggggaag ggactgaccgccatccctgccaacctgcctgataacatggccgagatacgtctggaacag aacggaatcaagtccgtccctcccggggccttctctccctacaagaaactccgccggata gacctgagcaacaaccagatctccgagatcgcccccgacgccttccagggcctgcgctcc ctcaactcactggtcctgtatgggaataagatcacggaacttccaaagggagtgttcgat ggcctgtacgccctgcagctgctgctcctgaatgccaataagatccactgcgtgcgggcc aacaccttccaggacctgcagaacctctcgctgctgtcgttgtacgacaacaagatccag acgctggccaagggcaccttcgcctcgctgcgtgccatccagaccctccaccttgcccag aacccgttcatctgtgactgtaatctgaagtggctggctgactacctgcgtgccaacccc atcgagaccagcggtgcccgctgtgccagtcctcggcgcctggccaacaagcgcattggc cagatcaagagcaagaagttccgttgctccgctaaagagcagtacttcatcccaggcacc gaggacagccgtctgaacaacgagtgcaacaacgagccggtgtgcccacccaagtgccgc tgcgagtccaacgtggtggactgctccaacctgcgcctgaccaaagtccccgagcacatc cccgcctccaccaccgagttgcgcctgaacaataatgagatcaccacactggaggccacc ggtgtgttcaagaccctcgcgcagctcaagaaaataaacctcagtaacaacaagatcacg gagatcgaggacggcgcttttgaaggggcctcgtctgtcatcgagctgcacctgaccgcc aaccagctggactctgtgcgcagcggcatgttcaaaggcctggagggcctccgtatgcta atgctccggaacaatcgcatcagctgcatccacaacaacagcttcacagggctctacaat gtgcgtctgttgtcgctctatgacaaccagttgaccaccatcacccctggagcctttgac accttgcagaccctctccactctgaacctgctggccaactccttcaactgtgactgccgt ttggcatggctgggagactggctccgcagccgcaagattgtcacaggcaacccacgctgc cagcggccagcgttcctcaaggagatcccgctccaggacgtggcactcccagacttccgc tgcgaagagggccaagaggatgtgcagagctgcataccgcgcccccagtgccccagcgag tgtacctgcctggagacggtggtgcgttgcagcaacaagcacctgcgcgccctgcccaag ggcatcccccgcaacgtcaccgagctgtatttggatggaaaccagttcagtgtggtgccc aaggagctctccaccttcaaatacctgcagctggtggacttgagcaacaacaagatcaac tctctgaccaactcctcctttgccaatatgagccaactcacaaccctaatccttagctac aacgccctgcgttgcatccccaacttggcgttcagtggactgcgctcactccgtctactg tcactgcatggcaatgacgtctccgagcttcctgacggcatcttcagtgacgtggcctca ctgtcccacctggccatcggagcgaaccccctttactgcgactgccgcctgcgttggctg tcagactgggtgaagactggctacaaggagcctggcatcgcccgctgtgctggcccacat ggcatggagggcaaactgctgctcaccacacccgcaaagaaatttgagtgccaaggtgaa gtggatcccctagtcctggccaagtgtaacccctgtctgtcagccccatgccacaaccag ggcatctgcctgagtgaccctgtggacatctacaaatgtacctgtcccgagggcttcaag ggtaagaactgtgagacggcactcaatgcgtgtgtcagcaacccctgtgccaacggagga gtgtgccagctcattggagaggagggggacactttcagttgctcttgcccatctggcttt gagggccccacctgccaggtgaacatagacgactgcgaggacaacgactgtgagaatggc gccacctgtgtggatggggtcaacaactatacctgcctgtgtcttcctctttacacaggc gagatgtgtgaggagatggaggatgtgtgtgcgccagggcggagcccgtgccagcaccag gccacgtgtctcatcacgtccactggtcctcagtgtgtgtgcactccaggttatgtcggt gatgactgcagtatgaactatgatgactgtcaagatcaccggtgtcagaatgaggctcag tgtgtggatgagctcaatggctactcatgctcctgcagggaaggctacagtggtcagttg tgtgaggtgcccaagtcccctcgctctctctgtgacctggccgactgccagaacgacgcg ctgtgtgtggagcgctccggccgggccatctgccagtgtctcccaggcttcggcggccca cgctgcgagaagctggtcagcgtcaacttcgtcgaccgggactcctacctcctcctcagt gacctgaagaactggcctcaggccaacatcacactgcaggtgtcgacagcggaggacaat ggcatccttctgtacaacggagacaatgaccacattgctgtggagctgtaccaaggtcat gtaaaggtcagctacgatcctggcaaccagcctggcaacgccatctacagtactgaaacc atcaatgatggtcagttccacacggtggagctggtgactttcgaccagatggtgaacctg tccatcgacggcggcctccccaccaccatggacagcttcggcacagtgcggcccctgaac ggagacgctctgctttacgtggggggtaggggccctctgcagatacctccctccaccgca ggcatgcctgtggacgtgcactcggcggcgctgcgcatgtggcagctccaaaacggctcc agcttccacggctgcatccagaacctgtacatcaacaacgagctgcaggacttcaccaag acccagatgaagccgggcgtggtgccgggctgcgagccctgccggaagatctactgcctg cacggcatctgccagcccaacgccgcctcggggcccgtgtgccactgccagcccggctgg agcgggccacactgcgaccagccggccaccaacccatgccaaggcagcaagtgtgttcat ggaaagtgtattcctctggatgcgcagtcctaccgttgcgagtgtcaggagggctaccgt ggtgccctgtgcaaccagcagggggagctcttcaacccttgtaagaagctgcagtgcaaa catggccgttgccagatctctgacacaggtgacgccttctgcaactgcgagagcggctac actggagatctgtgtgacagagagtcggagtgccgaggggatccggtgcgggatttctac caggtgcagcgcggctatgccatctgccagaccacgcgcatggtgtcgtgggtggagtgc agcggcgtatgcgacacgggcgcctgctgcgccagccagcgcatgaagcgccggaaatac acctttgagtgcagcgacggcacctccttcagcgaggaggtggagaagaccatcaagtgc ggctgcgtggggtgcatgtag

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