Alosa sapidissima (American shad): 121693013
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Entry
121693013 CDS
T11137
Symbol
bcl11ba
Name
(RefSeq) BAF chromatin remodeling complex subunit BCL11B a isoform X1
KO
K22046
B-cell lymphoma/leukemia 11B
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121693013 (bcl11ba)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121693013 (bcl11ba)
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Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
CCHC_BCL-11A
zf-H2C2_2
zf-C2H2_16
zf-C2H2_15
zf-H2C2_5
Actin_micro
Zn_SUZ12
Motif
Other DBs
NCBI-GeneID:
121693013
NCBI-ProteinID:
XP_041928076
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Position
19:28237422..28292181
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AA seq
876 aa
AA seq
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MSRRKQGNPQHLSQREITPEADHVEAVLDRARDASQLSPAPPPPPALSPAPSQPPAAARA
PLTRSLCRCRTPSIMPCWTPRCAAPLPASLGDHDLLTCGQCQMTFSLGDILLFIEHKKKQ
CQSLMGNHGCYDKMADRGGGGRRGGGGGGGGGGGGGGCGSSPSPLHQRPELRKVVEPVEI
GIQVTPEEEDDRLLTPPKGICPKQESVQPGRDEPASYICTTCKQHFSSAWFLLQHAQNTH
GIRIYLEANSNNVTLTPQITLRPPMGAESIPQSPLTNFLGDNNPFHLLRMTGPLLREPPP
GFVENRLPGTPPFVSPPPRHHLDPHRLERLSAEEMGLISQHPSAFERVMRLNPMAIESQS
MDFSRRLRELAGNNTTTVAAGTPPLSPSRANPMHRLLNANPFQASPKSPFLSTPPLPPMP
PNSTTPPQTQAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRH
MKTHMHKSGSMTGRSDDGLSATSSPEPGTSDVTGEGMKNRDGDFSGEGCENEEEEEEEEE
EELENESRPESNFSMDSEFCRNRENGSKPPSEEKDMSLGKMVETSGLNSIQQYNNLIVDN
RKRLPFSKRCSDGQRDTGDHDSVGGEMDHVERATVNGRNCGSSDSFSGLFPRKPTPITSP
SLSNSSKRIKIEKDLDIPPAPLIPSENVYSQWLVGYAASRHFLKDPFLGFTDSRQSPFAT
SSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGGHGRPGSKESRRSDTC
EYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQLGKEVYRCDI
CQMPFSVYSTLEKHMKKWHGEHLMTNEVKIEQAERS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcgcaagcagggaaacccacagcacttgtcacaaagagaaataacaccggaa
gctgaccatgtggaagccgtgttggaccgtgcccgagatgcctcccaactctcacccgca
cccccacccccacccgcactctcacccgcaccctcacagccacccgctgcagcacgcgca
cccctcacccgctccctctgccgctgccgcacgccctccatcatgccatgctggaccccg
cggtgtgcggcccctctgcccgcgagcctgggcgaccacgacctgctcacctgcggccag
tgccaaatgaccttctctctaggggacatcctgctcttcatcgagcacaagaagaagcag
tgccagagcctgatgggcaaccatggctgctacgacaaaatggctgaccgcggcggtggc
ggtcgaagaggcggaggaggaggaggaggaggaggagggggtggaggaggttgcggcagt
agcccctcgccgctgcaccaacgccccgagctgcgtaaggtggtggaaccggtggagatc
ggaatccaggtgactcccgaggaggaggacgacagactgctgacgcccccgaaaggaatt
tgccccaagcaggagagcgtccaaccaggtagagatgaacctgcaagctacatctgcacg
acctgcaaacagcatttcagcagtgcctggttcctcctccaacatgctcagaacacccac
ggcatccgcatctaccttgaggccaacagcaacaacgtgaccttgaccccccaaatcacc
ctccgtccacccatgggtgccgagtccataccccaatctcctctcaccaattttttaggc
gacaacaaccccttccacctgctgcgcatgacgggccctctgcttcgagaaccgcctccc
ggctttgtggagaaccggctccccggcacaccgcccttcgtcagccctcccccacgccac
cacctggacccgcatcgcttggaacgccttagcgccgaggaaatgggcttaatctcccag
caccccagtgccttcgagagagtgatgcgcctcaaccccatggccatcgagtcccagtcc
atggacttctcgcgccggctccgcgagctcgcgggcaacaacaccaccaccgtcgccgct
ggcacgccaccactctcgcccagccgcgccaaccctatgcaccgcctgctcaacgccaac
cccttccaggccagccccaagtcgccctttctgagcacgcctccgctgccgcccatgccg
ccaaacagcacgacgccgccccagacgcaggccaagagcaagtcgtgcgagttctgcggc
aaaacgttcaagttccagagcaacctgatcgtgcaccggaggagccacacgggcgagaaa
ccgtacaagtgccagctgtgcgaccacgcctgctcgcaggccagcaagctcaagcggcac
atgaagacgcacatgcacaagtccggctccatgaccggccgctcggacgacgggctgtcg
gccaccagctcgccggagcccggcacgagcgacgtcacgggcgagggcatgaagaacagg
gacggcgacttcagcggcgagggctgcgagaacgaggaggaggaggaggaggaggaggag
gaggagctggagaatgagagcaggcccgagtccaacttcagcatggactcggagttctgc
cgcaatcgcgagaacggctccaagccgccctcggaagagaaggacatgtccctgggcaag
atggtggagacctctggactgaactccatccagcagtacaataacttgatagtcgacaat
cgcaaaaggcttcctttctccaaacggtgctccgacggtcagcgcgacaccggagatcat
gactcagtggggggcgagatggaccacgtggagcgggcgacggtcaacggccgaaactgt
ggctccagcgactccttctcaggcctgttcccccgcaagcccacgcccatcaccagtccg
agtctctccaactcctccaagaggatcaagatcgagaaggacctggacattccccccgcg
cctctcatcccctccgagaacgtctactcccagtggctggtgggctacgcggcgtcgcgg
cacttcctcaaagaccccttcctgggcttcaccgactccagacaatctcccttcgccacc
tcgtccgagcactcgtcggagaacggcagcctgcgcttctccacgccgcccggcgacctg
ctggacgggggcctctcgggacgcagcggcacggccagcggcggcagcactccgcacctc
ggcgggcccggcggacacggccggcccggctccaaggagagccgccggagcgacacctgc
gagtactgcggcaaggtgttcaagaactgcagcaacctgacggtgcaccggcgaagccac
accggcgagcggccctacaagtgtgagctgtgcaactacgcctgcgcccagagcagcaag
ctcacacgccacatgaagacccacggccagctcggtaaggaagtctaccgctgtgacatt
tgccaaatgcccttcagcgtctatagcaccctggagaaacacatgaaaaagtggcacggg
gaacacttgatgaccaatgaggtgaaaattgaacaagctgagagaagctaa
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