Alosa sapidissima (American shad): 121698378
Help
Entry
121698378 CDS
T11137
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121698378 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asad03400
]
121698378 (lig4)
Enzymes [BR:
asad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121698378 (lig4)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121698378 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
121698378
NCBI-ProteinID:
XP_041936365
LinkDB
All DBs
Position
23:10202668..10206516
Genome browser
AA seq
906 aa
AA seq
DB search
MEENSSPVDSVAGHVPFIHLCSTLEKIQRARTRPDKVKFLQDFMDSWRNFHAALHKAKDV
TGDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLGLPQNGPEAKKLLNYRAPTTSQ
EESGDFAGMAYFVLKKRCDSEGELTIKQVNDFLDSVAIHNAKKQKDQVKKNLLHLITQSS
ALEQKWLIRMILKDMKLGVSKETVLQAFHRDGPELYNVTTDLNKVCKQLHDPTVSLSEVS
IGLFSAFKPMLAAVTNIKQVEKQIAGKMLFIETKLDGERIQLHKDGDVYKYYTRNSFEYS
QQFGTSPLEGSLTPFIHNVFKPHVVQCILDGEMMAYNPTTETMTQKGSKFDIKRLMEDSE
LQACFCVFDILLLNDQKFANEPLKKRQEILPTVVTPVKGRIQLVSRVEARTTQEVVNALN
EAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRGGM
MSHFLCAVAETPPAGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPPAAIL
CATEKPEVYIEPSKSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCMTLDEL
SQYRCKASGKLASRHFHIQEGQPDAKRRKKIVPKPKKQVGIIDHFRSQDLSAISKETDMF
EDVEFCVINGTEEHSKAELERGVARCGGIIVQNPGKDTYCIIAGVENMRVKNLISSDQHD
VVWASWLLECLDQKQVVPWQPRHMIHMSPSTREHFAQEYDAYGDSYFVDTDTQQLREVFS
RISTSNLQELSVGDVQEKYGWEDLPTSMFRPFTAYIDRCTDIKDPKSVILGSCLDTCALE
FRFHGGTVEQKLLEGVSHVIVAEETRILEFRVLRRLFKKKFKIVEQTWVTDSIKAGHLQN
DNDYLK
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaactcaagtccagtggattctgtggcgggccatgtcccattcattcacctg
tgttctactcttgaaaagatccagagagcaagaacacgaccagacaaagtaaaatttttg
caggacttcatggattcatggagaaacttccacgctgcccttcataaagcaaaagatgtg
actggtgactcattctaccctgctatgcggctcattgtcccttcttttgaacgggagagg
atggcttacggaatcaaggagaatatgttggcaaagctctacatcgatgttttgggtctt
ccacagaatgggccagaggcaaaaaaacttctcaactaccgtgctccgacaacttcccag
gaagagagtggggattttgcgggcatggcatactttgtcttaaagaaacgctgtgatagc
gagggggaactaacaataaagcaagtgaatgactttctggattctgtcgcaatacacaat
gccaaaaagcagaaagaccaggtgaagaagaacctcctccatctgatcacccagagttct
gccttggagcagaagtggctgatccgtatgatcttgaaagacatgaagcttggggtcagc
aaggaaacggtgcttcaggccttccatagagatggccccgagctctacaatgtaaccact
gacttgaacaaggtgtgtaagcagctccatgacccaacggtgtccttgagtgaggtctct
attggactcttctctgcctttaagccaatgctggcagctgttaccaacatcaagcaggtg
gaaaaacagattgcaggcaaaatgcttttcattgagacaaagcttgatggagaacgcatc
cagctgcacaaagatggagacgtttataaatattacacacggaactcctttgagtactct
caacagtttggtacttcaccacttgagggctccctcacacctttcattcacaatgttttt
aagcctcatgtagtgcagtgtatcctggatggtgagatgatggcctataacccaacaact
gagacaatgacgcaaaaaggtagcaaatttgacatcaagaggttaatggaggactccgag
ttacaagcttgcttctgtgtctttgacatcctactcctcaatgaccagaaatttgcaaat
gagccattgaaaaagcgtcaagagattcttccgaccgttgttacaccggtgaaaggtcgg
atccagctagtctccagagtcgaggccagaaccacacaggaggtagttaatgcactcaac
gaagccattgacaatcgtgaagaaggcatcatggtcaaagaccctttgtcgatctacaaa
ccagacaagcggggggagggatggctgaaaatcaagccggagtatgtagatggcctgatg
gatgagctggacttgttaatagtcggtggttactggggtaaaggcagacgaggaggaatg
atgtcccatttcctgtgtgctgtagcagaaacaccccctgcaggtgagaagccatcagtc
ttccatactctgtgccggattggctctggctacactatgaaggagctgtatgaccttggt
ctgaagttggcaaaacattggaaggtgtaccgaaaaaatgatccaccagcagccatcttg
tgtgccactgagaaacctgaggtgtacattgaaccgagcaagtctgttatcattcaagtc
aaagcagcagagattgtgagcagcgatatgtacaagactaactgtacacttcgcttccct
cgtattgagaagatccgggaagataaggagtggcaccaatgcatgactttggatgagctg
agtcaatatcgatgtaaagcttcaggaaaactggcctccaggcactttcatattcaggaa
ggacaacctgatgcaaaaagacgaaagaagattgttcccaagcccaagaagcaggtaggc
attattgaccattttagatctcaggacttgtcagccatttcgaaagaaactgacatgttt
gaagatgtagagttctgtgtgattaatggaactgaggaacactccaaggccgagctggag
aggggtgtggcgcgctgtggtggaatcattgtgcaaaatccagggaaggacacatactgc
attattgcaggggtggagaacatgcgggtaaagaacctcatctcttctgaccagcatgat
gttgtctgggccagttggcttctagaatgtctggaccagaaacaggtggtgccatggcaa
ccaaggcacatgattcacatgtccccatccacgcgggagcactttgctcaggagtatgac
gcttatggtgacagctactttgtggacacagatacacagcaactaagggaggtgtttagc
aggatctccacctcaaacctacaagaacttagtgtaggtgatgtgcaagagaagtatggc
tgggaagatttaccaaccagtatgtttaggccttttacagcctacattgatcgctgcact
gacattaaagatcctaagagtgttatccttggatcttgcttggatacatgtgctcttgag
ttccgattccatgggggcactgtggagcagaagcttctagaaggtgtgtctcatgtcatt
gttgccgaagagacaagaatactggaatttagagtgcttcgaagactgtttaaaaagaag
tttaagattgttgaacagacatgggtgacggactccatcaaagcgggacacctgcagaat
gacaatgactacctgaaatga
DBGET
integrated database retrieval system
