Alosa sapidissima (American shad): 121706295
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Entry
121706295 CDS
T11137
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121706295 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121706295 (eftud2)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121706295 (eftud2)
Complex C
U5 SnRNP specific factors
121706295 (eftud2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121706295
NCBI-ProteinID:
XP_041943842
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Position
3:18762248..18775058
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AA seq
970 aa
AA seq
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MEADLYDEFGNYIGPELDSDEDDDLEAEDRDIDEVDEDDEDEPGEGDEDVPSMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLMEQELPATVYDMEFLADL
MDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGIK
STPVTMVLPDSRDKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKIDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDESLVVSP
LLGNVCFASPQYSTCFTLASFAKIYSDTYGDVNYTEFAKRLWGDIYFNPKTRKFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNR
FFGEFTGFVDMCVQHIPSPQTGARAKIEHSYTGGLDSDLAEAMTECDPDGPLMCHTTKMY
STDDGVQFHAFGRVLSGTLQAGQPIKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEVN
RVPAGNWILIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFH
HWQIVPGDPLDKGIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVMLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctctatgatgagtttggtaattacatcggtccagagctggactcagac
gaggatgatgacctggaggccgaggacagggacatcgacgaggtagatgaagatgatgaa
gatgagccaggagaaggagatgaagatgtccctagcatggaggtggtcctgcatgaggac
aagaaatattatcccacagccgaggaggtgtatggaccggaagtggagactattgtccaa
gaggaggacacacaacctttaacagagcccattattaagcctgttaaaaccaaacagttc
acactcatggagcaggagttaccagcaactgtctatgacatggagttcttggctgatctg
atggacaatccagaactgatcaggaatgtcacgctctgtggtcacctgcatcatggaaag
acatgctttgtggactgcttgattgaacagactcacccagaaatccggaagagagatgat
gcagatcttcgttatacagacatcctcttcactgagcaggagagaggagttggaatcaag
agcacccctgtcacaatggtacttcctgactccagggataaatcatacctgttcaacatc
atggacacaccaggtcatgtgaacttctccgatgaggtgaccgcagggatccgcctctca
gacgggatcgtgctcttcatcgatgctgcagagggcgtgatgttgaacacggagcgtctg
ataaaacacgccgtgcaggagcgcctggccatcaccatctgcatcaacaaaatcgaccgg
ctgatcgtggagctcaagctcccccccaccgacgcctactacaagctgcgccacatcgtg
gacgaggtcaacggcatgctcagcacgtactccacagacgagagcctggtggtgtctcct
ctcctgggcaacgtgtgcttcgcctcccctcagtacagcacctgctttacactcgcctcc
ttcgccaagatctactcagacacgtatggtgatgtcaattacacagagtttgccaagagg
ctgtggggcgacatttacttcaacccaaaaacgcggaagttcaccaagaaggctcccacc
agtaactcgcagcgcagctttgtggagtttgtgctggagccgctctataagatcctgtct
caggtggtgggggactgtgacacatcactgccgcgagtgctggacgagctgggcatccac
ctgaccaaagaggagctcaagctcaacatccgaccgctgctccggctcgtctgcaaccgt
ttctttggggagttcacaggttttgtggacatgtgtgtgcagcacatcccgtctccccag
acaggggctcgagccaagattgagcacagctacacaggcggcctggactccgacctggcg
gaggcaatgaccgagtgtgacccagatggccctctcatgtgccacaccaccaagatgtac
agcactgatgacggggtccagttccatgcctttggacgtgttctaagtggaaccctgcaa
gcaggtcaacccatcaaggttcttggggagaactacacgttggaggatgaagaggactcg
caggtctgcaccgtcggccgcctctggatctcagttgccaggtaccagatcgaagtgaac
cgtgtcccagcaggaaactggatcctaattgagggttgtgatcagccaatcgttaaaaca
gccaccatcacagaacctcgaggaaatgaagaggctcagatcttcaggccgctgaagttt
aacactgcctcagtgatcaagatcgctgtggagcctgtcaacccgtctgagctgcccaag
atgttggacggtctcaggaaagtcaacaagagctacccctctctgaccactaaggtggag
gagtctggggagcatgtcatcttgggaacaggtgagctctacctggactgtgtgatgcat
gacttgcgcaagatgtactccgaaattgacatcaaggtggctgaccctgtggtgaccttc
tgtgagacagttgttgagacctcgtcactgaagtgttttgccgaaacacccaataaaaag
aataagatcaccatgattgcggagccactggagaagggcctggcagaggacattgagaac
gaagtggtgcagattacttggaacagaaagaagttgggagagtttttccagaccaagtac
gactgggatttgctggccgctcgttccatctgggccttcgggcctgacaccactggcccc
aacattctagtagacgacactctgccttctgaggtggataaagctttgctgggctctgtg
aaggacagcatcgttcagggattccagtggggaacgagagagggaccactgtgtgatgaa
cccatccgtaatgtgaagtttaagatcctggatgcagtgatcgcccaagagccgctgcat
agaggtggaggacaggtcatccccaccgcccgacgagtggtctactcagccttcctcatg
gccacacctcggttgatggagccatactactttgtggaggttcaagccccagctgattgt
gtgtcggcagtgtacactgtactcgcaaggagaagagggcacgtgactcaggatgcacct
atccctggctctcccctgtacaccatcaaggccttcatccctgccatcgactccttcggc
tttgagacagacttgcggacacacactcaggggcaggcatttgcgctgagcgtgtttcac
cactggcagattgttccgggtgatcccctggataaggggattgtgattcgtcccctggag
ccccagcctgcccctcacctggcccgggagttcatgatcaaaacacgccgacgcaagggc
ttgagcgaggatgtgagtatcagcaagttcttcgacgatcctatgttgttggagctggcc
aaacaggacgtgatgctcaactaccccatgtga
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