Alosa sapidissima (American shad): 121709926
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Entry
121709926 CDS
T11137
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121709926 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121709926 (trpc5a)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121709926 (trpc5a)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121709926 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
121709926
NCBI-ProteinID:
XP_041949588
LinkDB
All DBs
Position
5:complement(12408577..12444234)
Genome browser
AA seq
1051 aa
AA seq
DB search
MNPMAQLYYKKASYSPYRDRIPLQIVRAEAELSPAERAYLTAVEKGDYAGVKHALEEAEI
YYNINVNCLDPLGRSALLIAIENENLEVMELLLSHGVHVGDALLYAIRKEVVGAVELLLS
YRRPSGEKQVPSMMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTVPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKTLASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSHQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPRECRDLAKLKLAIKYH
QKEFVAQPNCQQLLATLWYDSFPGWRRRHWVVKLVTCFVIGLLFPVFSLVYLLAPKSALG
LFIKKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWA
EIKEMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKMVAYFKYNSSRPREEWEMWHPTLI
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETQASDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFT
EFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGATL
PPPFNIVPSPKSVWYLCVWVHSRLCAKGQPNPEEQKKHGNFKEITERHADNLIQNQHYQE
VIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSSS
DATQQDEDPTDDLKAKSPKGVSFSLSSSSDKRSRDSEFGVSALFHSMSGTTEGSAMEGPA
TEDDNDSAPDNDKKPKSNGLRKFTCSSSFIRNGGRLQRFSRSKKDSLRRLGLLFSRMNGH
LPEPASSSRSAYSISDGVDLRMAAEPLQVTRSEMHLHRLAGLGLDEMVGAHADAHHNTSQ
QQRHHRQQLEQQQQQQQRQSNGRDGTLLLRPPSAGQPLALGPLHCASTITASSSRLLSSS
EDMYEGWVGPCDSLGSISWTGDQEESVTTQL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatggcgcagctgtactacaagaaggcgagctactcgccgtaccgcgaccgc
atcccgctacagattgtgcgcgccgaggccgagctgtcgccggccgagcgcgcctacctg
acggcggtggagaagggtgactacgccggcgtcaagcacgcgctggaggaggccgagatc
tactacaacatcaacgtcaactgcctggaccctctggggcgcagcgcgctgctcatcgcc
atcgagaacgagaacctggaggtgatggagctgctgctgagccacggcgtgcacgtgggc
gacgcactcctctacgccatacgcaaggaggtggtcggcgccgtcgagctgctgctctcc
taccggcggcccagcggcgagaaacaggtgccctccatgatgatggacacgcagttctcc
gagttcacgccggacatcacacccatcatgctggcggcgcacaccaacaactacgagatc
atcaagctgcttgtgcagcgcaaggtgacggtgccgcggccgcaccagatccgctgcgac
tgtgtggagtgcgtgtccagctcggaggtggacagcctgcgccactcgcgctcgcgcctc
aacatctacaagactctggcgtcgccgtcgctcatcgcgctctccagcgaggatcccatc
ctcaccgccttccgcctgggatgggagcttaaggagctcagcaaggtggagaacgagttc
cggcaggagtacgaggagctctcgcaccagtgcaagctcttcgccaaggacctgctggac
caggcacgcagctcgcgcgagctggagatcatcctcaaccaccgcgacgaccacagcgag
gagctggacccacgggagtgccgagacctggccaagctcaagctggccatcaagtaccac
cagaaggagtttgtggctcagcccaactgccagcagctgctggccaccctgtggtacgac
agcttcccgggctggcgccgccgccactgggtggtcaagctggtcacctgcttcgtcatc
gggctcctgttccccgtcttctccctggtctacctgctggcgcccaagagcgccctgggc
ctcttcatcaagaagcccttcatcaagttcatctgccacaccgcatcctacctcaccttc
ctcttcctcctgctgctcgcctcgcagcacatcgttcgcaccgacctgcacgtgcagggc
ccgccgcccaccgtggtggagtggatgatcctgccctgggtgctgggcttcatctgggcc
gagattaaagagatgtgggatggtggcttcacggaatacgtccacgattggtggaacctc
atggattttgccatgaattcactctacttagccaccatatctctgaaaatggtcgcttac
ttcaagtacaacagctctcgcccacgtgaggagtgggagatgtggcacccgacactcatc
gccgaggccctgttcgccatcgccaacatcttcagctcgctgcgcctcatctcactcttc
actgccaactcgcacctgggcccgctgcagatctcgctcgggcgcatgctgctggacatc
ctcaagttcctcttcatctactgcctcgtcctgctggccttcgccaacggcctcaaccag
ctctacttctactacgagacgcaggcgtccgacgagcccaacaactgcaagggcatccgc
tgtgagaagcagaacaatgccttctccacgttgtttgaaactctacagtcacttttctgg
tcagtgtttgggctcctcaacctgtatgtcaccaacgttaaggcacgacacgagttcacg
gagtttgtaggtgcaaccatgtttggcacttacaatgtcatctccctggtggtgttactc
aacatgctcattgccatgatgaacaactcataccagctcatagcggaccatgctgacatc
gagtggaagttcgctcgaacgaagctgtggatgagctactttgacgagggggccacgctg
cctcccccctttaacatcgtccccagcccaaagtcggtgtggtacctgtgcgtgtgggtg
cacagccggctgtgtgcgaagggacaacccaacccggaggagcagaagaaacacggcaac
ttcaaggagataacggagcgtcatgctgacaacctcattcagaatcagcattatcaggaa
gtaattaggaacttggtgaagaggtatgttgctgcaatgatccgcagtgcaaagactgat
gaaggcctgacagaggaaaacttcaaagagctgaagcaggacatctccagctttcgctac
gaggtgctggacctgctgggcaaccgcaagccaccccgtcgcacctactcgtccagcagc
gacgccacacagcaggatgaggaccccaccgacgaccttaaagccaaaagccccaagggc
gtatccttcagcctctcctcgtcgtccgacaaacgctcccgggactcagagtttggcgtg
tcggcgctcttccactccatgtcgggcacgacggagggctcagccatggagggtccagcg
acagaggacgacaacgacagcgcgccggacaacgacaagaaaccaaagagcaacggcctg
cgcaagttcacgtgctcgtcctcgttcatacgcaacggcggacgcctgcagcgcttctcg
cgctccaagaaggactcgctgcggcgcctgggcctgctcttctcccgcatgaacggccac
ctgcccgagcccgccagctcctcgcgctccgcctacagcatctcggacggcgtggacctc
cgcatggcagccgagcccctgcaggtcacgcgcagcgagatgcatctccaccggctggcg
gggctcgggctggacgagatggtgggggcgcacgccgacgcgcatcacaacacgtcccag
cagcaacggcaccaccgacagcagctagagcagcagcagcagcagcagcagaggcagtcc
aacgggcgggacggcaccctgctcctgcggccgccgtcggcggggcagcccctggccctg
gggcccctgcactgtgcttccactatcacggcgtccagctcgcgcctgctcagctccagc
gaggacatgtacgagggctgggtggggccttgcgacagcctggggtccatcagctggaca
ggggaccaggaggagtcggtcaccacccagctctga
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