Alosa sapidissima (American shad): 121709993
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Entry
121709993 CDS
T11137
Symbol
rb1
Name
(RefSeq) retinoblastoma-associated protein isoform X1
KO
K06618
retinoblastoma-associated protein
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04110
Cell cycle
asad04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121709993 (rb1)
04218 Cellular senescence
121709993 (rb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121709993 (rb1)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121709993 (rb1)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121709993 (rb1)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
121709993 (rb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121709993
NCBI-ProteinID:
XP_041949704
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Position
5:1449515..1519273
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AA seq
933 aa
AA seq
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MPPKKRTPQNKEIKQNVTSSDNVKSPSKNSDDSVVSTPKHRDKEVDFVSLCKDLQVTNSL
CNHAWSIWKKVSESTEKMPDTNKKMWAACLFVAGIDMDVLSPNFTEVQKAAGLNVKQFLE
VMRNLDVNIDIISSKVNSAVSKLEKKYDVSLALYQRFEKIWKDIYTEPSEPESTELFSSI
WTMFILAKGRFLQMEDDLVISFQLLICVLEFFIKRSSPSLIKPLYSEFFIKRSTPSLIKP
LYSESSPSLIKSLYSAKMTPTRSSRRNQGKAKPRPPEANEPLLEVICRENECNLDEVKNV
YETVFSPFLESSGFSKSQDLPKFEELSAKFEEVSVKTKDFDGRLFLNGEEKCSQEKTDIG
HVESTPKKSVFAEEFNPAILQTPVRATLYSVQQLRVSLTSASDQPSDTLMTYFKNCTVNP
TEEVVKRVKCLGELFSQAFAQVVSPGCSGLGNQRFALGVRLYYRVMESMLKSEEKRLSVH
NFSKLLNDSTFHTSLLACSLEVVMATYGSGLATETDLSFPWLLSVLQLHSFHFYKVIESF
IKAEPSLHRDMVKHLERCEHMIIESIAWKTDSPLFELLQQAGEDGRLETAEPPASLHQPP
QHSHTAADLYLSPVRPSRPLPPVQDRSPPTTAQPPSASAQASAQASRPPRSNSLGHFYKK
LYRVAYLRLKMLCTRLLSDHAELEPIIWTLLQHTLKDEYELLRDRHLDQLLMSAMYAICK
VKFVDLRFKTIVTAYKELPNTNQETFKHVLISEGKYDSIIVFYNMVFMQRLKTNILQYAS
SRLPTLSPIPHIPRSPYKYPNSPLRVPGSSNVYVSPMKSCASPMTPRSRILISLGESFGN
SERFQRINEMVKSSEWTLKRRADGAGGPKPLKRLRFDTEGQDEPDGSKPSGGSALIQKLT
EMNSTRSRMQEQKMKEEAESVREEVPNGVEKHE
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctaagaagcggacgccacagaacaaggaaataaaacaaaacgtcaccagttca
gataatgtaaagtctccaagcaagaattcagatgactctgttgtgtccacgcctaagcat
agagacaaagaagtggatttcgtcagcctttgcaaagatctccaggtgacaaattcactc
tgtaatcacgcctggtcaatatggaagaaagtttcggaatccacggagaaaatgcccgac
acaaacaaaaagatgtgggcagcctgtctgttcgtggctggaatagacatggatgtcttg
agccccaacttcacagaagtgcagaaagctgctggcctcaacgtgaagcagttccttgaa
gtgatgaggaacttggacgtgaacattgacatcatcagctccaaagtgaattctgctgtg
agcaagctggagaagaagtacgacgtgtccctggccctctaccagcgctttgagaagata
tggaaggatatctacacagagccctcggagccagagagtacagagctcttcagcagcatc
tggaccatgttcattctggctaaaggaaggtttctgcagatggaggatgacctggtgatc
tccttccagttgctcatctgcgttctggagttcttcatcaaacgctcctcaccctccctg
atcaagcccctttacagtgagttcttcatcaaacgctctacaccctccctgatcaagccc
ctttacagtgagtcctcaccctccctgatcaagtccctttacagtgcaaagatgaccccc
acgcggagctcccggcgtaaccagggcaaagccaaaccgcggccgccggaggcaaacgag
ccgctgctggaggtcatctgccgggagaacgagtgcaacctggacgaggtgaaaaatgtt
tacgagactgtcttttctccctttttggaatcatcaggcttttcaaagtctcaggactta
ccaaagtttgaagagctgtcagcgaagtttgaagaagtttctgtaaaaactaaagacttt
gatggcagactgttcctgaacggtgaagaaaaatgcagccaggagaaaacggacattggc
catgtggagagtacccctaagaagagtgtgtttgctgaggagttcaacccagctattctg
caaacacccgtcagggcaaccttatactctgtccagcaactccgggtctccctcacctcc
gccagtgaccagccctctgacacgctcatgacctacttcaagaactgtacggtgaacccg
acggaggaggtggtcaagcgtgtgaagtgcctgggggagctcttcagccaagccttcgcc
caggtggtcagtccaggatgctcgggcctcggcaaccagaggttcgctcttggtgtgcgg
ctgtactacagagtgatggagtccatgctgaaatcggaggagaagaggctgtcggtacac
aacttcagtaaacttctcaacgactccacattccatacgtcccttctggcgtgttccctg
gaggttgtcatggcaacatacggcagcggtctggccacagagacggacctgagcttcccc
tggctgctgagtgtgctccagctccacagcttccacttctacaaagtgatcgagagcttc
atcaaggccgagcccagcctccaccgcgacatggtcaaacacctggagcgctgcgaacac
atgatcattgagagcatcgcctggaaaacggactcccctctgtttgagctgctgcagcag
gctggagaggatggtcgcctggagaccgctgagccccccgcctccctacaccagcccccc
cagcacagccacaccgctgccgacctctacctgtcaccggtgcgtccgagcagacccctg
ccccccgtccaagaccggagcccccccactactgcccagcccccatcggcctccgcccag
gcctccgcccaggcctccagaccccccaggtccaactcgcttggccacttctacaagaaa
ctgtacagggtggcgtacctgcgcctgaagatgctgtgcacgcgtctgctgtcggaccac
gcggagctggagcccatcatctggacgctgctgcagcacacgctcaaggacgagtatgag
ctgctcagggaccgacacctggaccagctgctgatgtctgccatgtacgccatatgcaaa
gtgaagtttgtggacctgcgcttcaagactatcgtcaccgcgtacaaggaactcccaaac
actaatcaggaaacatttaagcacgttctgatcagcgagggcaagtatgactccatcatc
gtcttctacaacatggtcttcatgcagaggctcaagaccaacatcctccagtacgcctcc
tccaggcttcccaccctgtcccccatcccgcacatcccccgcagcccctacaagtacccc
aactcccccctgcgcgtccctgggagcagcaacgtctacgtgtcccccatgaagagctgt
gcgtccccgatgaccccgcgctcaaggatcctaatatcactcggagaatcatttgggaac
tctgaacggttccagaggattaacgagatggtgaagagcagcgagtggacgctaaagagg
agggcggacggcgctggcggccccaaaccgctgaagagactgcgcttcgacaccgaggga
caggatgagccggacggcagcaaacccagtggaggatcagcattgattcagaagcttaca
gaaatgaactcgactcgcagccggatgcaggagcagaagatgaaggaggaagcagagtct
gtgagagaggaagttccaaacggagtggagaaacacgaatga
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