Alosa sapidissima (American shad): 121711691 Help Entry 121711691         CDS       T11137                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism asad  Alosa sapidissima (American shad) Pathway asad04115   p53 signaling pathway asad04145   Phagosome asad04148   Efferocytosis asad04350   TGF-beta signaling pathway asad04510   Focal adhesion asad04512   ECM-receptor interaction asad04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:asad00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     121711691 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121711691 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121711691 (thbs1b)    04148 Efferocytosis     121711691 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     121711691 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     121711691 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     121711691 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:asad04131]     121711691 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:asad00536]     121711691 (thbs1b) Membrane trafficking [BR:asad04131]  Endocytosis   Phagocytosis    Opsonins     121711691 (thbs1b) Glycosaminoglycan binding proteins [BR:asad00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121711691 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 Laminin_G_3 TSP1_CCN cEGF Zn_ribbon_NUD EGF Laminin_G_2 Laminin_G_1 Motif Other DBs NCBI-GeneID:  121711691 NCBI-ProteinID:  XP_041951431 LinkDB All DBs Position 6:28958246..28971269 Genome browser AA seq 1172 aa AA seqDB search MKLTGIFLLLMVWHSESARVAETRDDDNMYDLFELIQVPKKNHGVSLVKGDDPYSPAYKI LNPDLIPPVPKNAFRDLLDSIHTERGFLLLVNFKQAKRTRGSLLTIEKQDGSGPIFEIVS NAKANTLDIVYSTENKQQVMSIEDADLATGHWKNITLFVQEDRAQLYVGCEEVNTVELDV PIQNILNKDIPIYANLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSTILTDLI TLDNPINGSRPAIRTDYTGHKTKDLQMICGFTCDDLAAMFKELKTLGVVVKDLSDQLNKV TDQNRELMKSININNISVCIHNGIVHKNNDEWTVDDCTECTCRNSAIVCRKISCPLIPCA NATVPDGECCPRCGTPSDFADDGWSLWSEWTRCSVSCGRGVQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGGWSHWSPWSSCSVTCGAGDITRIRLCNSPTPQMSGKDCEGEA RQTQKCQKSPCPINGGWGPWSPWDTCSATCGGGRQTRKRLCNDPSPKYGGKDCIGDGTAT QTCSKQPCPIDGCLSNPCFAGAQCTSFPDGSWKCGKCPSGYTGNGIKCKDINECKEVPDA CFEFNGVHRCENTVPGYNCLPCPPRYSGPQPFGRGVEEAAAKKQVCTPRNPCLDGSHDCN KHARCNYLGHFADPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNC PNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFVFNPRQYDYDRDDVGDRCDNCP YNSNPDQTDTDNNREGDACAVDIDGDGIMNEKDNCPYVYNVDQRDSDLDGVGDQCDNCPL EHNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDGDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTER DDDYAGFVFGYQSSARFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRI YDRTYAGGRLGLFVFSQEMVYFSDLKYECRDL NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagttaacaggaatatttttgttgctgatggtttggcacagtgagagcgcaagagtc gcagagactagagacgacgacaatatgtacgacctattcgagctaatccaggtccctaag aaaaaccatggggtcagcctggtgaaaggcgacgacccatacagccccgcctacaaaatc ctgaaccccgacctgatccccccggtccccaagaacgccttcagggacctactcgactca attcacacggagagaggattccttctcttggtcaatttcaaacaggccaagaggaccaga ggcagcctgctgaccattgagaagcaagacggctccggacctatttttgaaatagtttcc aatgccaaggccaacacgctggacattgtgtattccacggagaacaagcaacaggttatg tccattgaagatgcggacttggcaacggggcattggaaaaatatcactctcttcgtgcaa gaggacagggctcagttgtacgtaggctgtgaagaggtgaatacagttgagctggatgta cctatccagaacatcctgaataaggacatccctatatatgcaaacttgagaatcggcaaa ggagcagtcaaagacaggttcatgggtgtgcttcagaacgtgcgttttgtatttggaacg actctggatgcgatcttaaggaataaaggctgccaaagcacaattctgacagacctcata accttggacaatcccatcaatggctctagaccagctatcaggacagattacactggccac aaaacaaaagatcttcagatgatttgtggcttcacctgtgatgacctggcagccatgttc aaggaactgaagaccctgggggtggtggtgaaagacctgtcggaccagctcaataaagtg actgaccagaacagagagctcatgaagagcatcaacatcaacaacatcagcgtctgtatc cacaatggcattgtccacaagaacaacgacgagtggaccgtggacgactgcaccgagtgc acttgccggaactcagccatcgtgtgtcgcaagatctcctgccctctcattccctgtgcc aacgccaccgtgcccgatggggagtgctgccctcgctgtggcaccccgagcgactttgct gacgacggctggtccctgtggtctgaatggactcgttgttcggtgtcctgcggacgaggc gtgcagcaacgggggcgctcctgcgatcgcatcaataacaactgcgagggcacgtcggtg cagacgcgcgactgctacctccaggagtgcgacaagcgcttcaaacaagatggcggctgg agccactggtcaccttggtcctcctgctcggtcacctgtggcgctggtgacatcacccgt atccgcctctgcaactcgccgaccccgcagatgagtggcaaggactgcgaaggagaggcc aggcagacgcagaagtgccagaaatcaccctgccccatcaatggaggctggggaccctgg tcaccctgggacacctgctcagcaacctgtggaggaggaaggcagacccgcaagcgcctc tgcaatgacccgtcgcccaagtatgggggcaaagactgcattggcgatggcacggcgacc cagacatgcagcaagcaaccctgccctatcgatggctgcttatccaacccctgctttgcc ggcgcccagtgcaccagcttccccgacggctcctggaagtgcggcaagtgcccatccggc tacaccggcaacggcatcaagtgcaaagacatcaatgagtgtaaggaggttcctgatgcc tgctttgagttcaatggcgtgcacaggtgtgagaacactgtcccaggctacaactgtctg ccctgtcccccgcgctactccgggccccagccctttggcagaggtgtggaggaggctgct gccaagaagcaggtttgcactccccgtaacccctgtctggacggaagccacgactgcaac aagcacgcccgctgcaactacctgggccactttgctgacccaatgttccgctgcgagtgc aagcctggcttcgccgggaacggtcacatctgcggtgaggacaccgacctggacggctgg cccaatgctgacctggtctgcgtggagaatgctacatatcactgcaagaaggacaactgc cccaacctgcccaactctggacaagaagactatgataaggacggcattggggatgcttgc gatgatgatgacgatgatgatggcattcctgacgacagggataactgcccgttcgtcttc aaccccaggcagtatgactatgaccgcgatgacgttggagaccgctgcgacaactgccca tacaacagcaaccccgatcagacagacacagacaacaacagagagggagacgcctgtgct gtcgacatagatggagacggcattatgaatgagaaggacaactgtccctatgtctacaac gtcgaccagcgcgactcagaccttgatggagttggggaccagtgtgataactgtcctttg gagcataatcctgaccagcttgactcggactcggaccgtgtgggagacaagtgtgacagt aaccaggacatcgacgaggatggtcatcagaacaacctggacaactgcccctacatcccg aatgccaaccaggcagaccacgacaaagacggcaaaggtgatgcctgcgaccacgatgac gacaacgacggtattcctgacgacaaagacaactgccgtctggctttcaacccagatcaa ctcgactccgatggtgatggccgtggagatgcttgcaaagatgactttgacggagacaac gtgccagatatctacgacgtctgcccagagaacttcgacatcagtgagaccgacttccgg aaattccagatggtgcctctggaccccaagggcacctcccagatcgaccccaactgggtg gttcgccaccagggcaaagagctggtacagacagtcaactgcgaccctggcattgctgtt ggctatgacgagttcaacgctgtggacttcagtggcaccttcttcatcaacactgagcgc gacgatgactacgccggcttcgtgtttggctaccagtccagcgcgcgcttctacgtagtc atgtggaagcagatcacacagacctactggtcaaacaagcccaccaaggcccaaggctac tcggggctgtccatcaaggtggtcaactccaccacgggccctggcgagcacctcaggaat gcactttggcatactggagacacgccaggacaggtgcgcaccctgtggcacgaccctaag aatgtcggctggaaggacttcactgcttacagatggcatctgacacacaggcccaggact gggcacatcagggttgtaatgtatgaaggcaagaagatcatggccgattcaggaagaatc tacgataggacttacgctggtggaagactaggtctctttgttttctctcaagagatggtg tatttctccgacctcaaatatgaatgcagagacttgtaa

DBGET integrated database retrieval system