Alosa sapidissima (American shad): 121715417
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Entry
121715417 CDS
T11137
Symbol
prdm6
Name
(RefSeq) putative histone-lysine N-methyltransferase PRDM6 isoform X1
KO
K20795
[histone H4]-lysine20 N-methyltransferase PRDM6 [EC:
2.1.1.361
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad00310
Lysine degradation
asad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121715417 (prdm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121715417 (prdm6)
03036 Chromosome and associated proteins [BR:
asad03036
]
121715417 (prdm6)
Enzymes [BR:
asad01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.361 [histone H4]-lysine20 N-methyltransferase
121715417 (prdm6)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
121715417 (prdm6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
121715417 (prdm6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
SET
zf-C2H2
zf-H2C2_2
zf-C2H2_4
Zap1_zf1
zf-C2H2_15
zf-C2H2_jaz
Motif
Other DBs
NCBI-GeneID:
121715417
NCBI-ProteinID:
XP_041957046
LinkDB
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Position
8:complement(3491660..3527007)
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AA seq
568 aa
AA seq
DB search
MLKPGDPSGSAFLKVDPTYIQHWQQLFPQAQLKNGALAQLQPPERVTIPVESLRQRPNLI
SVSSSSGLTSSSTSTHSSCTPSAVSSLAGLTQLSVPQIALFGQTLCTDLVTSDSSTQSKE
LCFSSNFKNDKSSKFKLTSEELDYYLYGQQRMEIIPLNNHTSDQTNRCDMCADNRNGECP
MHGPLHSLRRLVGTSSASSAVPPPDVPEWLRDLPREVCLCTSTVPGLGYGICAAQRIPQG
TWIGPFQGVPLLLEKVQAGAARNTRHLWEIYDQEGTLQHFIDGNEPSKSSWMRYIRCARH
CGEQNMMVVQYRSCIFYQACMDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPATV
IEAMSRQESLQPFSKGGKGGSSGVLLRSMVFPHSPCPRGFSLMDKGGPADSGYNQMGSKN
QRVLASPTSTSQLSSEFSDWHLWKCGQCFKTFTQRILLQMHVCPQNPDRPYQCGHCSQSF
SQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKTRQSMKQFLKAQ
VRALRPELHTGHAAEQTPADAQRVQAHQ
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcccggagacccgagcggctctgcttttttgaaagtggacccaacttacatt
cagcactggcaacagctcttccctcaagcacaactgaagaacggcgccctcgcgcagctc
cagccaccggagcgtgtcacgatcccggtggagagcttgcgacagcggccgaacctcatc
tctgtatcgtcctcatcgggtctcacttcgtcctctacgtccacacactcctcttgtacg
ccctcagcagtgtcttcgttggcaggtttaacgcaactctctgtaccacaaatcgcactt
tttggacaaactttgtgcactgacctggtaacgtcagatagcagcacacaatccaaggaa
ctctgcttttcgtcgaacttcaagaatgacaaaagctcaaagttcaaactgacctcggag
gagttagactactacctctacggacaacagaggatggaaataattccattgaacaatcac
accagcgaccagacaaaccgctgtgatatgtgtgcggataaccgtaacggagagtgcccc
atgcatggacccctgcactcgctgcggcgtttggtgggcaccagcagcgcgtcctccgcg
gtgccccctccagacgtgcctgagtggctgcgggacctgccgcgcgaagtctgcctctgc
accagcacggtgcccggcctcggctacggcatctgcgcagcccagcgcatcccacaaggc
acctggatcgggccctttcagggcgtccccctcctgctggagaaggtgcaggcgggagcc
gcgaggaatacacgacatctgtgggagatctatgaccaggaggggacactacagcacttt
attgatggcaatgagccaagcaagtccagttggatgcgttatattcgctgtgccaggcac
tgtggggagcagaatatgatggtggttcagtacaggtcatgtattttctatcaggcctgc
atggacatccctcgagggacagagctgctggtctggtacaacgacagctacacctccttc
tttggcatccctctccagtgcatcgcccaggatgaaaacctaaatgtccccgccactgtc
atcgaggcgatgtcccggcaggagagcctccagcccttcagtaagggtgggaagggggga
tcctctggcgtcctgctgcgctccatggtcttcccccactcgccctgcccacgaggcttc
tctctgatggacaagggtggtccagctgactccggctacaaccagatgggctccaagaac
cagcgtgtgctagcgagccccacctccaccagccagctgagctcagagttcagtgactgg
catctctggaagtgtggccagtgtttcaagaccttcacccaacgcatactactgcagatg
cacgtgtgcccacagaacccagacagaccataccagtgtggccactgctcacagtccttc
tcccagccgtcggagctgcggaaccacgtggtcacacactcaagcgaccggcccttcaag
tgtggctactgtggccgagccttcgctggagcaactacactcaacaaccacatccgcaca
cacactggggagaagccattcaagacaagacagagcatgaagcagtttctcaaagctcag
gtgcgagcgctgcgaccggagcttcacacaggccacgcagctgagcagacaccagcggat
gcccaacgagtgcaagcccatcagtga
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integrated database retrieval system
