Alosa sapidissima (American shad): 121715948
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Entry
121715948 CDS
T11137
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121715948 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121715948 (kdm2ba)
04121 Ubiquitin system [BR:
asad04121
]
121715948 (kdm2ba)
03036 Chromosome and associated proteins [BR:
asad03036
]
121715948 (kdm2ba)
Enzymes [BR:
asad01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121715948 (kdm2ba)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121715948 (kdm2ba)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121715948 (kdm2ba)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121715948 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121715948 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_At1g61320_AtMIF1
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
121715948
NCBI-ProteinID:
XP_041957947
LinkDB
All DBs
Position
8:complement(18220334..18243409)
Genome browser
AA seq
954 aa
AA seq
DB search
MAMSLSADDEDYDSDSTEQQRPPPNRPKPKMATAASASLSTPGSAGVKLPSNRSASGARR
RRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEA
GKEDTLDEEEEKFNAMLMECSICNEIVHPNCLKVKDVAGVVNDELPNCWECPKCNYAGKT
GKVVKQKRGPGFKYASNLPGSLLREQRLGREARDDGDQTPSASSAGAGVGIALGASGVSP
AGSLGGSTPGSAAISSSLGLKRKSDRDEPPRLRPDESSGPPTSRLPPLLTPSGLPRPRPE
IPAFLRKKRKLFEDDDEEEQQEEANARRKKKSWRDDPLIPKFSQVKKEEEEEEEEEEEEE
ERSEREQDEEEEEEDDKHTVKRLSRANEGRCSRLKQEEDDGEEEDEEQDEEEERSSRRSE
RSRSPGPLRATPASLESDQSLGSSPRAGPSSEGGGSGDGGPERTPPTRTSRGSAHPQPQP
QPQAQAQPQPQPHPPGHQQQQQHQQQARRRRRLPNRELSSELSKELNMEIQRTEDTLANE
NRQPLRHDPADSDRDDHEASENEEPKRPYRNGNPLAGLRDGRGGGGGDLDRVGGGGGGGG
GGGGERPHLRAREMNGTPWELRHFYGPPQITPLGFNRSSPAIRPLPPRSPPKCIQMERHV
IRPPPISPPPERLPLADGRSHVAQRELWLAIFSHMSHRDLCVCMRVCKTWNRWCCDKRLW
TRIDLNRCKSITPLMLSGIVRRQPATLDLSWTNISKKQLSWLINRLPGLRVLLLSGCSWV
AVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDTRSKLRNIVDLRLAG
LDITDSSLRLIIKSMPLLSRLDLSYCNHINDQSINLLTAAGTTTRDSLAEVNLSVCNRVT
DQSLSYFKRCGSICRIDLRFCKQVTRQACERFIAEMSVSVPFGLREDKLLQKLS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggctatgtcactgagcgcggacgatgaggattacgactccgacagcacagagcagcag
cgccctcctcctaatcggccgaaacccaagatggccacggcggcatccgcatcgctctcc
acgccggggtcggcgggggtcaaactgccatccaaccgcagcgcctcgggcgcccggcgg
agacgcacgcgctgcaggaagtgcgaggcgtgcgtgcggacggagtgcggcgagtgccac
ttttgcaaagacatgaagaagttcggcgggcccgggcgcatgaagcagtcgtgtatcatg
aggcagtgcatcgcgccggtcttgccgcacacagccgtgtgtgtggtgtgcggtgaggcg
gggaaggaggacacgctggacgaggaggaagagaagttcaacgccatgctcatggagtgc
tccatctgcaacgagattgttcaccccaactgcctgaaggtgaaggatgtggccggagtg
gtgaatgacgagctacccaactgctgggaatgccctaaatgcaattacgctgggaaaaca
ggaaaagtcgtcaagcaaaaacggggaccagggttcaaatacgcatccaacctgccgggc
tcgttgctgcgggagcagaggctgggccgtgaggcgcgagacgacggcgaccagaccccc
tcggcctcctccgccggagccggagtcggaatcgccctcggggccagcggagtcagccct
gcgggatctctgggtggatcgacgcctgggtccgccgccatctcctcctccctgggcctg
aagcggaagagcgaccgcgacgagccgccccgactgcggccggacgaatcctcgggtcca
cccaccagtcgcctgcccccgctgctcacgcccagcggcctgccgcgcccgcggcccgag
atcccggccttcctccggaagaagcggaagctgtttgaagacgacgatgaagaggagcag
caggaggaggccaacgccaggaggaagaagaaatcctggagagatgatcctctgatccca
aaattctctcaggtcaagaaagaggaggaggaagaagaggaggaggaagaggaggaggaa
gagcggtctgagagagaacaagacgaggaggaagaagaggaagacgacaagcacacggtg
aaacgcttgtccagagcaaacgagggccggtgcagtcggctgaagcaggaggaggacgac
ggggaggaggaagacgaggagcaagacgaggaggaagagcgcagcagccgccggagcgag
cgcagccgcagccccgggcctctccgagccacgcccgcctcgctggagagcgaccagtcg
ctgggcagttccccgcgggccggacccagcagcgagggcggcggcagcggggacggagga
ccggagaggacgcccccgacccgcacgtcccgtggctccgcacacccccagccccaaccc
caaccccaggcccaggcccagccccagccccagcctcacccccccggccaccagcagcag
caacagcatcagcagcaggcccggaggcggcgtcggctgcccaaccgcgagctgagcagc
gagctgagcaaggagctgaacatggagatccagcgcactgaggacacgctggccaacgag
aaccgccagcccctgcggcacgacccggccgactccgaccgcgacgaccacgaggccagc
gagaacgaggagcccaagcgcccttaccgcaacggcaacccgctggccggcctgagagac
gggcgcggcggaggaggtggggatctggatcgagtcggtggcggcggcggaggaggagga
ggtggcgggggtgagaggccgcacctgcgcgcccgcgagatgaacggtacgccgtgggag
ctgcgtcacttctacggcccgccgcagatcacgccgctgggcttcaaccgcagctcgccc
gccatccggcctctgcccccccgctcgccgcccaagtgcatccagatggagcggcacgtg
atccggccgccacccatcagcccgccgcctgagcgcctgccgctcgccgacggacgcagc
catgtggcccagcgcgagctctggttggccatctttagtcacatgagccaccgcgacttg
tgtgtctgcatgcgcgtgtgcaagacatggaaccgctggtgttgtgataagagactgtgg
acacgtattgacctgaaccgctgcaaatccatcactcctctgatgctgagtggaatcgtg
cgccgacagcccgccactctggacctcagctggaccaacatctccaagaaacaactcagc
tggctcatcaacagactaccaggtctgagagtgctgctgctgtcgggctgctcgtgggtg
gccgtgtctgctctgtgcacctcgtcctgtccgctgctcaggactctggacgtccagtgg
gtggagggcctcaaggacgctcagatgcgagacctgctctcccctcccaccgacaaccgc
ccaggtcagatggacacacgcagtaagctgaggaacatagtggaccttcgtctggcgggc
ctggacatcacagacagctccctgcggctcatcatcaagagcatgcccctgctgtcccgt
ctggacctcagctactgcaaccacatcaacgaccagtccatcaacctgctcaccgccgct
ggtaccaccaccagagactccctcgcagaggtcaacctgtcagtgtgcaaccgagtgaca
gaccaatcgctgtcctacttcaagcgctgtggcagcatctgccggatcgatctgcggttc
tgcaagcaagtgacgagacaggcgtgcgagcgcttcatcgccgagatgtccgtcagtgtg
ccgtttggcctgcgcgaggacaagcttcttcagaagctcagctag
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