Alosa sapidissima (American shad): 121718058
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Entry
121718058 CDS
T11137
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121718058 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121718058 (kdm2aa)
04121 Ubiquitin system [BR:
asad04121
]
121718058 (kdm2aa)
03036 Chromosome and associated proteins [BR:
asad03036
]
121718058 (kdm2aa)
Enzymes [BR:
asad01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121718058 (kdm2aa)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121718058 (kdm2aa)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121718058 (kdm2aa)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121718058 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121718058 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
BACK_BPM_SPOP
Motif
Other DBs
NCBI-GeneID:
121718058
NCBI-ProteinID:
XP_041958818
LinkDB
All DBs
Position
1:complement(41787640..41809191)
Genome browser
AA seq
1281 aa
AA seq
DB search
MDESRPRYSKRLRSGTRRRYHDDGISDDEIEGKRTFDLEEKLRSDRFSSDRVKRLVGKEF
NFEYIQREGLRDPIIFERPDGLGIKMPDPDFSVNDVKSYVGSRRVVDVMDVTTQKNIEMS
MAHWRRYYETPPAQREKLYNVISLEFSHTKLENLVQRPATVDIIDWVDNMWPRHLKERQR
DSTNAIIDMQYPKVQKYCLMSVQGCYTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKATDCQRIELKQGYTFIIPSGWIHAVYTPVDTLVFGGNFLHS
FNIPMQLNIYGIEDRTRVPAKFRYPFYYEMCWYVLERYLFSLTNTSHLTPEFQKHSLGIG
LKREASSEDSENLNGHTKEEDDEDDEKPPSPLINPGVKVHLTAFELEGLWSLLGKLESLP
SHKKCVPAGIHNAPALLHDIRALLKEHASDIPKLSYTGKPIVKWPRRPSWYQPPPPPAPV
GRPRLSGTVVTPRPVKPPSSMSVLRRRRVRCKRCEACLRTECGECNFCRDMKKFGGPGKL
KQTCVLRQCLAPGLPLSAACEVCGEGNPEPGESQTFSLMLMECSNCAQIAHPGCLKVPGD
GVVNKDLPSCWECPKCVLDQGNNSEIKLERKKIHMKRKSSSLDGRPAKLYRRRGNEDDDD
SGSDDDDDDEGLRPSGRKMSIHVRGGTSAGRRGYGAGRRGMWRGTSHRGRGRGGGLAPSS
GLKMRRGFGVRGERGGRVRLRGGARMQRRRYESDDDDDDDDDDDDDDDDDDDDDDDDDDE
SDEEHMGHTEKGHRRRRRRRRRRGDDDDDDDDDDDDDEDSEDRDLDGEDEDMEDLDEDGE
EKDDEDDDEDDDNQTDSEPEPPVLLVSDLNDELLNGSYLTVTLQRPTKAKRDPGSIVPKL
EAAMSPRAPAGSHPGAGFVQRKTLHKARHKNNGGATGNGLTQSKGGALAAAGRHARHGNH
RHHHHHHGERDTASPSSSASSRSSVSPTPPPPSSSASPPSLLSHPSFREVGNEPGGEKEV
WVSVFHYLTLTELSVCMTVCKAWYKWGCDKRLWTHIDLSRCRSLTSQALSGIIKRQPVIL
DLSWTPISKKQLSWLIHRMPGLKDLLVAGCSWLSVSALSSSSCPYLRTLDLRWAEGVRDG
QIKDLVTPQGNESRSRLRGMQTLRLSGLDISDSTLRLLLRHMPLLQRLDLAHCRAITDQS
INLLTATGSPTRHTLTELNLAGCHKLTDACLQFLKRASALQLLDLRGCKGVTRRACESFI
SDLSYCTYFCMTDNKLIQRIS
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatctcgcccacgatacagtaaacgactgcggtcaggcacgaggcggcgctac
cacgatgatggcatctcagacgacgagattgagggaaagaggacctttgacctggaggag
aagctgcggagtgatcgctttagctctgaccgggtcaagcggctcgtcgggaaagagttc
aactttgaatacatccagagggagggacttcgcgaccccatcatctttgagaggccggat
ggactgggcatcaagatgccagaccctgacttcagcgtcaatgatgtgaaaagttatgta
ggcagtcggcgggtggttgacgtgatggatgtgaccactcagaagaacatcgagatgtcc
atggcacactggaggcggtactatgagacaccacccgcccagagagaaaagctgtacaac
gtcatcagtctggagttcagccacactaaactagagaacctagtgcaaaggcctgcaacg
gtggacatcattgattgggtggacaacatgtggccccggcacctgaaggagcgacaaaga
gactccaccaatgccatcatagacatgcagtaccccaaagtccagaaatattgtttgatg
agtgtgcagggctgctacacagacttccacattgacttcgggggcacgtctgtctggtac
cacatactgcgaggaggaaaggtgttctggctgatcccacccacaccgcagaacctggag
ctctatgagaactgggtgctgtcgggcaaacagggggacattttcctgggggacaaggcc
accgactgccagaggatagaactcaagcagggatacacattcatcataccatcaggctgg
atccatgcagtctacacgccagtggacacgctggtctttggtgggaacttcctgcacagt
tttaacatccctatgcagctcaacatctacggcatagaggatcgcacacgggtccctgcc
aagttccgctacccattctactatgaaatgtgttggtatgtcctggagaggtacctgttc
agcctgaccaacacttcgcacctgactccagagttccagaaacactctctggggattggt
ctaaagcgagaggcctccagtgaagacagtgaaaatcttaatggacacaccaaagaggaa
gatgatgaggatgatgagaagccgccctctcccctcatcaatcctggggtcaaagttcac
ctgactgcgtttgagctggaggggctgtggagcctgctggggaagctggagtccctgccc
tcccataagaagtgtgtccctgctggcatccacaacgcacccgccctgctgcatgacatc
agggcactgctaaaggaacatgctagtgacatccccaaactatcctacactggaaaaccc
attgtgaagtggccaaggaggccctcgtggtatcagcctcctcctcccccggcccctgtg
gggcgcccccgcctgtccggcacggtggtgacgccacggccggtgaagccaccctcgtcc
atgtcggtgctgcggcggaggcgcgtgcgctgcaagcgctgtgaggcctgtctgcgcacc
gagtgcggcgagtgcaacttctgcagagacatgaagaagtttggcggccccggcaagctc
aagcagacatgtgtgcttcgccagtgcctggcgcctggcctgcccctgtctgcagcgtgt
gaagtgtgtggggaggggaaccctgagcctggcgagtcccagaccttctccctcatgctc
atggagtgctccaactgtgcacagatcgctcaccctgggtgccttaaggtgccaggagac
ggcgtggtaaataaagacctgcccagctgctgggaatgccccaagtgtgtcctggaccag
ggcaataactctgagattaagttggagcggaagaaaatccacatgaaacggaagtcttcc
tcactggatggtcgtcccgctaagttgtatcgccggcgaggcaacgaagatgatgacgac
tcgggcagtgacgacgacgatgacgacgagggcttgcgaccaagcggcagaaagatgtcc
attcatgtccgtggtgggacttcggctggtcgtcgtggttatggtgctgggaggcggggc
atgtggagaggcacctcccaccgtggcaggggacgaggcggtggattggctcccagctct
gggctgaaaatgaggcgcggctttggggtccgaggcgagagaggcggccgggtcagactc
cgcggtggagcaaggatgcagcggcgacgctacgaatccgatgatgatgatgacgacgac
gacgatgatgacgacgacgacgacgacgatgatgatgacgacgatgatgacgatgacgaa
agcgatgaagagcacatgggccacacagagaaagggcaccggcggcggcgaaggagacgc
agaaggagaggggacgacgacgacgacgatgatgatgatgatgacgacgatgaagacagc
gaggaccgggacctggacggagaggatgaggatatggaagacttggatgaagatggtgag
gagaaggatgacgaagacgacgatgaagacgatgacaaccagacagactcggagcccgag
ccgcctgtgctgcttgtgtcggacctgaatgacgagctgctcaatggctcgtacctgacg
gtaaccctgcagcggcccaccaaggccaagcgcgaccccggctccatcgtgcccaagttg
gaggccgccatgtccccgcgggcgcctgccggcagccatcccggtgcaggcttcgtccag
cgcaagaccctgcacaaggcgcgccacaagaacaacggcggtgccacgggcaacggcctc
actcagtccaagggcggagcgttggcggcggcaggcagacacgcgcgccacggcaaccac
cggcaccaccaccaccatcacggtgagagggacacagcgtcaccgtccagctcggcgtcc
tcccgctcctctgtgtcgcccacaccgcccccgccctcctcctctgcctctcctccctcg
ctcctctcccatccctccttccgggaggtggggaacgagccaggtggcgagaaggaggtg
tgggtgtctgtgttccactacctgacgctcacggagctcagcgtctgcatgaccgtctgc
aaggcctggtacaagtggggctgtgataagcgtctttggacccacatagacctcagccgc
tgccgctctctgacctctcaagccctctctggcatcattaagcgccagccagtgattctt
gacctctcctggacacccatttccaaaaagcagctctcctggctcatccaccgaatgcca
ggcctgaaggatctgctggtggccggctgctcctggctgtccgtgtcggcactcagctcc
tccagctgcccctacctgcgtaccctggatctgcgctgggccgagggggtccgagatgga
cagatcaaagacctggtcacaccacaaggcaacgagtcacgcagccgactgcggggcatg
cagaccctacgcctgtccggtctggacatcagcgactcgacactgcggctgctgctcagg
cacatgcccctgctgcagcggctggacctggcccactgtcgggccatcactgaccagtcc
atcaacctgctcactgccacaggctcccctacccgccacaccctcaccgagctcaacctg
gcaggttgtcataagctgaccgacgcgtgtctgcagttcctgaagcgtgcgtctgcgctg
cagctgctggacctgcggggctgtaagggggtgacgcggcgcgcctgcgagagcttcatc
tccgacctctcctactgcacctacttctgcatgacggacaacaagctcatccagaggata
tcctaa
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integrated database retrieval system
