Alosa sapidissima (American shad): 121718448
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Entry
121718448 CDS
T11137
Name
(RefSeq) platelet-derived growth factor subunit A-like
KO
K04359
platelet-derived growth factor subunit A
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04010
MAPK signaling pathway
asad04020
Calcium signaling pathway
asad04510
Focal adhesion
asad04518
Integrin signaling
asad04540
Gap junction
asad04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121718448
04020 Calcium signaling pathway
121718448
09133 Signaling molecules and interaction
04518 Integrin signaling
121718448
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121718448
04540 Gap junction
121718448
09142 Cell motility
04810 Regulation of actin cytoskeleton
121718448
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
asad04052
]
121718448
00536 Glycosaminoglycan binding proteins [BR:
asad00536
]
121718448
Cytokines and neuropeptides [BR:
asad04052
]
Cytokines
Growth factors (RTK binding)
121718448
Glycosaminoglycan binding proteins [BR:
asad00536
]
Heparan sulfate / Heparin
Growth factors/receptors
121718448
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF_N
PDGF
Spt5_N
Motif
Other DBs
NCBI-GeneID:
121718448
NCBI-ProteinID:
XP_041959394
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Position
9:5257019..5266251
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AA seq
198 aa
AA seq
DB search
MMAALYRLLICYVCLLHTIAEEVQIPQELIDRLSNSEIRSISDLQRLLDMDSIENEVVQE
TKKRYHKDSHHGYHGSDLKSYQTLSRRKRSVEEAVPASCRTRTVIYEIPRSQVDASAANF
LIWPPCVEVKRCTGCCNTSNMRCQASRKQHRIVKVAKVEYVRRVRRPKLREVQVKLEDHL
ECVCTSRHLSAHSDSDVW
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgcactttatcgtttacttatctgctacgtgtgcctgcttcacactattgcc
gaggaggttcaaatccctcaagaactcatcgacagactctccaacagtgaaatccgcagc
attagtgacctccagcggctgttggacatggactccatagagaatgaggtggttcaggag
acgaagaagagataccacaaggactcgcaccatggttaccatggcagtgacctgaagagc
taccagacgctgtctagacgcaagcgaagtgttgaggaggcagtgccagcatcgtgccgg
acgcggacagtcatctatgagatcccgcgtagccaggtggacgccagcgccgccaacttc
ctgatctggccgccgtgcgtggaagtgaagcgctgcacgggctgctgcaacaccagcaac
atgcgctgccaggcctcgcgcaagcagcaccgcatcgtcaaggtggctaaggtggagtat
gtgcggagggtgcggaggcccaagctgcgggaggtgcaggtgaagctggaggaccacctg
gagtgcgtgtgcacctcgcggcacctcagtgcccactccgactcagatgtgtggtga
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