Alosa sapidissima (American shad): 121721016
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Entry
121721016 CDS
T11137
Symbol
tap1
Name
(RefSeq) antigen peptide transporter 1
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad02010
ABC transporters
asad04145
Phagosome
asad05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121721016 (tap1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121721016 (tap1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121721016 (tap1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121721016 (tap1)
Enzymes [BR:
asad01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
121721016 (tap1)
Transporters [BR:
asad02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
121721016 (tap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
RsgA_GTPase
nSTAND1
RNA_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
121721016
NCBI-ProteinID:
XP_041963492
LinkDB
All DBs
Position
10:9210443..9218660
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AA seq
726 aa
AA seq
DB search
MQKMSYLSPLLFLLVDVCVVLGVRQAQLSPLLIPHPFVVLWAGGLLRAFALLFLTYTYPG
TLPWMKSFEGIQTVCVFSFLSPAYITFLWTIGRSAVERLWGWHSWEALLQSYVVIAVSLL
FWIRYMPNILSKETQKPTKKNGASLQRLLGYMRPHALRFTAVMTLVIVSSLGEMAIPHYT
GKMTDWIMNEDEPEAFSHAITVMSVITIMSALCEFVCDLIYNVTMSKIHTFIQGLVFQSV
LKQEIAFFDKSTTGEIVSRITTDTNTMSESLSEKLSLLMWYFWRVIFLFGFMLNLSWKLS
LFTAMGLPIIWVIPEISGKFYQKLSKDVQASLAKANEVAMETFSSMKTVRSFANEDGETE
RYQKRLEETYSLNKKEAAAYAVSTWTNSMSSLALKVSILYYGGRLVTGDDVSSGDLVSFV
LYELQFSSAVEVLMNYYPHVKKAIGASEKIFQYVDRTPEIPPDGTLAPQKLHGHVQFQNV
TFSYPKRPAILKGLSLELKPGQMTAVVGPSGGGKSSCVNLLERFYQPEQGCILLDGEPLQ
SYKDEYLHQKISVVSQEPKLFARSLKENIKYGIEDASDEDMIQAAKSAYVHEDIMKMQNG
YNTDAGSKGDMVSGGQKQRIAIARALVRKPKILVLDDATSSLDTRSEEGVHKALAKMRKE
LQCSVLLIAHRLSAVERADHIVFLQDGKVQEEGSHDQLVQRGGLYAEFVKKQNTSIHRNA
AEETSG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatgtcgtacctctcgccactactgtttttgctagtggatgtgtgtgtggtg
ctaggtgttcgccaggcccagctttcccccctcctcatcccacatccctttgtggttctt
tgggctgggggactgctccgagcctttgccctccttttcctcacctacacctaccctggc
accttgccctggatgaagagctttgaagggatccagaccgtctgtgttttcagcttcttg
tctccagcttacatcacctttctctggaccatcggaaggtcggccgtggagaggctgtgg
ggatggcattcttgggaagcgttactgcagagttatgtggtgattgctgtgtccttgctg
ttctggatacgctatatgccaaacattctgtcgaaggagacgcaaaaacctaccaaaaag
aatggggcctccctgcaaagactgctgggatacatgaggccgcatgccctgcgttttact
gctgtcatgaccttagtgattgtctcctcactgggcgagatggctattcctcactacaca
gggaaaatgacggattggatcatgaatgaggatgagcctgaggccttctctcatgccatc
acagtcatgtctgtgattaccatcatgagtgcgttgtgtgagtttgtgtgtgacctcata
tacaacgtcaccatgagcaaaatacacacatttatccagggtctggtcttccagtctgtg
ctgaaacaggaaatcgccttctttgacaagtcaactacaggtgaaatcgtgtcgcgcatc
acgacggacaccaacaccatgagcgagtcgctgagtgagaagctgagtctgctgatgtgg
tacttctggagggtgatctttctgttcggcttcatgctcaacctgtcctggaagctgtcg
ctcttcaccgccatggggctgcccatcatctgggtcatcccagagatctccggaaagttc
tatcagaaactgtccaaggacgttcaagcgtctctggctaaggctaatgaagttgccatg
gagaccttctcgtccatgaagacagtgcggagcttcgctaacgaggacggggagacagaa
cgctaccagaagcgactggaggagacctactccctcaacaagaaagaagcagcagcctat
gcagtgtccacatggaccaacagtatgtccagtctggctcttaaggtcagcatcttgtac
tacggaggacgcctggtgaccggagatgatgtcagcagtggagacctagtgtcctttgtg
ttgtatgagctgcagttcagcagtgcagtggaggtgttgatgaattattacccccatgtg
aagaaggccataggtgcctcagagaagatttttcaatatgtggatcggactcctgagata
ccgcctgacgggactttggcaccacaaaaacttcatggacatgtgcagttccaaaatgtt
accttctcttatccaaagaggccagctatactgaagggcttgtctctggagctgaagccg
ggtcagatgacggcggtggtgggtccctccggtggtgggaagagctcgtgtgtgaacctg
ctggagcggttctaccagcccgaacagggatgcatcctgctggacggagagcccctgcag
tcctacaaggacgagtacttacaccaaaagataagtgtggtgagtcaggaacccaagctg
tttgcccgcagtctgaaggagaacataaaatatggcatagaggacgcctctgacgaggat
atgatccaggcggccaaaagtgcctatgttcatgaggatatcatgaagatgcagaatggc
tacaacacagatgctggctccaaaggcgacatggtctctggtggtcagaagcagcgcata
gccattgccagagctctcgtccgcaagccaaagattcttgtgctggacgatgcgaccagc
tcactagatacaaggagcgaggaaggggtccacaaagctctggctaagatgagaaaggag
ctgcagtgctccgtgcttctgatcgcccaccggctgagcgctgtggagagggccgaccac
atcgtcttcctccaggacggtaaggtccaggaggagggatcccacgaccagctggtccag
agagggggtctgtacgccgagtttgtgaagaagcagaacacctccatccatcgcaacgct
gcggaggagaccagcggctag
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