Aggregatimonas sangjinii: FGM00_09175
Help
Entry
FGM00_09175 CDS
T07837
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asag
Aggregatimonas sangjinii
Pathway
asag03030
DNA replication
asag03410
Base excision repair
asag03420
Nucleotide excision repair
asag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FGM00_09175 (ligA)
03410 Base excision repair
FGM00_09175 (ligA)
03420 Nucleotide excision repair
FGM00_09175 (ligA)
03430 Mismatch repair
FGM00_09175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asag03032
]
FGM00_09175 (ligA)
03400 DNA repair and recombination proteins [BR:
asag03400
]
FGM00_09175 (ligA)
Enzymes [BR:
asag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FGM00_09175 (ligA)
DNA replication proteins [BR:
asag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FGM00_09175 (ligA)
DNA repair and recombination proteins [BR:
asag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FGM00_09175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FGM00_09175 (ligA)
MMR (mismatch excision repair)
DNA ligase
FGM00_09175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FGM00_09175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
RNA_lig_T4_1
HNOB
OAS1_C
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QCX00273
UniProt:
A0A5B7STB0
LinkDB
All DBs
Position
complement(2233487..2235481)
Genome browser
AA seq
664 aa
AA seq
DB search
MSSAEKIKLLRDELRQHNHSYYVLDDPTISDYEFDMKLRELQQLEEQHPEFFDPTSPSLR
VGGTVTKNFKTVVHNHRMYSLDNSYSKDDLEDWEKRVKRGLGDAEVTFTCELKYDGASIN
LTYESGILVRAVTRGDGTQGDDVTTNVKTIKSVPLHLKGDYPPKFDIRGEIVLPFEGFAR
MNEERIENGEEPYMNPRNTASGSLKLQDSAVVAQRPLDCLLYGIVGENTGIKTQWQMLQK
AREWGFKVPTIAKLCTTTEEVMDFVAHWDVHRHELPYETDGVVIKVNNLQQQDELGFTSK
SPRWALAYKFKAEQVSTVLNEITYQVGRTGAITPVANLKPVLLAGTTVKRASLHNADQIE
KFDIREGDTVFVEKGGEIIPKIIGVDFSQRPKDSTPTVYIDHCPECHTPLVRSEGDAKHY
CLNYYGCPTQITGRIQHYISRKAMDIEGMGSETVTLLFNEGLITNYADLYTLTREQVMPL
ERMAEKSAVNLVKGVSDSVQVPFERVLFALGIRFVGETVAKKLAKAYKNIDALMNSSLEE
LTAVDEIGERIAQSVVEFFQNEDNRIIIAQLKRYGVQFSLSETQLENQTDKLKGKTIVVS
GVFETISRDELKKLIEDNGGKVGSSISSKTTYLVAGDKMGPSKRTKAEGLEVPIISEKEF
LALI
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgctgaaaagattaaactactacgcgatgagttacgccagcataaccactcc
tactacgtgctcgacgaccccaccatttcggattacgaattcgacatgaaacttagggaa
ttgcagcagctcgaagaacagcatccggaatttttcgaccctacctcgccaagcctccgc
gttgggggaacggtgaccaagaatttcaaaaccgtcgtgcataatcaccgcatgtactct
ttggataattcctactcaaaggatgatttggaagattgggaaaaacgggtaaaacggggt
ctaggcgatgccgaagtgacctttacctgcgaattgaagtatgatggggcctctatcaat
ctcacctatgaatcggggatattggttagagccgttactaggggtgatggtacccaaggc
gacgatgttaccacaaatgtaaagaccataaagtcggtgcccttacatttgaaaggcgat
tatccacctaaatttgatattcgaggagaaatcgtattgccttttgagggttttgcacga
atgaacgaagaacgtatcgaaaatggggaagagccctatatgaaccctaggaatacagct
tcgggaagtttaaagctacaggatagcgcagtcgtggcgcaacgcccattagactgtctt
ctttatggtattgttggtgaaaatacaggtattaaaacgcagtggcaaatgttgcaaaag
gccagggagtggggttttaaagtgccaacaatcgccaaattgtgcacaaccactgaagag
gtcatggacttcgtagcgcattgggacgtacatcggcatgaactaccctatgaaacagat
ggggtcgtcattaaagtaaataatctacagcaacaggatgaattgggctttacttcaaaa
tccccgcgttgggcattggcttacaaatttaaagcggagcaggtctctacagtattgaat
gagattacctatcaggtcgggagaacaggtgcgataactccagtagcgaatcttaaaccg
gttttattggccggtactacggtgaagagggcctcattgcacaatgccgatcaaatcgaa
aagttcgacatacgcgagggcgataccgtttttgtcgaaaaaggtggggaaatcattcct
aagatcattggggtagatttcagccaaaggccaaaagactctacaccgaccgtttacata
gaccattgtccggagtgccataccccattggtgcgttctgaaggagatgccaaacactat
tgtttgaattactacggttgtccaacccagattacgggtcgcattcagcactatatttcc
cgcaaggctatggatattgaaggaatgggaagcgaaacggtaaccttgctttttaacgag
ggactcattaccaactatgcagatctttatacgttgaccagggagcaagtaatgccgttg
gaaagaatggccgaaaaatctgctgtaaacctggtcaaaggagtttcggattccgttcaa
gtgccttttgagcgcgtgctattcgcattgggcattcggttcgtaggcgaaacggtcgct
aaaaagttggcaaaagcctacaaaaatattgatgcgttgatgaactcttcgctagaagaa
ttgacagctgtcgatgaaataggggaacgcattgcccagtccgttgtagagttcttccag
aatgaagacaacagaatcattatagcgcaactaaaacggtacggggtacaattttcgctc
tcggaaacacaattggagaaccagacggacaagcttaaggggaagacgattgtagtatcc
ggagttttcgaaaccatttctagagacgaattgaaaaagcttatcgaggataatgggggg
aaagtaggctccagcatttcatcaaaaactacttatttggtagcgggggacaaaatgggc
ccgagcaaacgcaccaaggcagaaggactagaagtaccgattatctccgaaaaggagttt
ttggctttaatctag
DBGET
integrated database retrieval system
