Acidovorax sacchari: AVXHC19_25280
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Entry
AVXHC19_25280 CDS
T10802
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asah Acidovorax sacchari
Pathway
asah03030
DNA replication
asah03410
Base excision repair
asah03420
Nucleotide excision repair
asah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AVXHC19_25280 (ligA)
03410 Base excision repair
AVXHC19_25280 (ligA)
03420 Nucleotide excision repair
AVXHC19_25280 (ligA)
03430 Mismatch repair
AVXHC19_25280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asah03032
]
AVXHC19_25280 (ligA)
03400 DNA repair and recombination proteins [BR:
asah03400
]
AVXHC19_25280 (ligA)
Enzymes [BR:
asah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AVXHC19_25280 (ligA)
DNA replication proteins [BR:
asah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AVXHC19_25280 (ligA)
DNA repair and recombination proteins [BR:
asah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AVXHC19_25280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AVXHC19_25280 (ligA)
MMR (mismatch excision repair)
DNA ligase
AVXHC19_25280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AVXHC19_25280 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
BFO55725
UniProt:
A0ACD8I5S5
LinkDB
All DBs
Position
2825596..2827794
Genome browser
AA seq
732 aa
AA seq
DB search
MAEHPDLFSAPAQDDPGDLGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQTLQAL
ETAHPELVTPDSPTQRVIGAVMEGLTPVRHTVPMLSIRTETDTEASGAETFDARVRRELK
LAPDAPPIEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLP
TGGRQGVPPVLEVRGEVYMRRADFDRLNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQ
RPLSFFAYGLGDITPATEGGPDFATHFDMLQQLKAWGFPVAAQVRTAQGAAELVAFHQEV
GASRDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGR
TGKLTPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGTVPT
ALLPVAGALQGSDALVDAASGADGTASGADAARAAPRSPYVPNFRMPRQCPICGSAVVRE
KGEANHRCTGGLFCPAQRKEALLHFAQRRAMDIEGLGEKLVDQLVEGQVIRTLPDLYRLG
LTALSSLDRMAEKSAQNVLAALEKSKHTTLPRFLFGLGIRHVGEATAKDLARHFGGLDAI
IGASVEQLLEVNDVGPIVAEAIHTFFAQPHNREVVEQLRACGVTWKEGPPAERTTLPLAG
KTFVLTGTLPTLSREDAKERLEAAGAKVAGSVSKKTHYVVAGEEAGSKLTKAQELGVPVL
DEAGMLALLQGS
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacatcccgacctgttttccgctcccgcccaggacgaccctggggacctgggc
cgccgcgtcgccgcgctgcgggcgcagttgcaccaatgggcacaccagtactacgtactg
gatgcgcccaccgtgccggatgccgaatacgaccgcgtcttccagacgctgcaggcgctg
gagacggcccatcccgagctcgtcacgcccgactcgcccacgcagcgcgtgatcggcgcg
gtgatggagggcctgacgcccgttcgccacacggtgccgatgctcagcatccgcaccgag
accgataccgaggccagcggcgccgagacgttcgacgcccgcgtgcgccgggagctcaag
ctcgcgcccgatgcaccgccgatcgaatacgttgccgagcccaaattcgacggcctggcc
atgagcctgcgctacgagaacggccgcctggtacaggccgccacgcgtggcgacggcgaa
gtgggtgaggacgtgacccacaacatccgtaccatccgccagattcccctcacgctgccc
acgggcggacgccagggcgtgccgcctgtgctcgaggtgcggggcgaggtctacatgcgc
cgggcggatttcgaccggctcaacgagcgccaacgcgaggccggcggcaagactttcgtc
aacccgcgcaacgcggcggccggcgcggtgcgccagctcgactcgggcattgccgcgcag
cggcccctgagcttcttcgcctatgggctgggcgacatcactccggcgacagaaggcggt
cccgacttcgcgacccatttcgacatgctgcagcagctcaaggcctggggcttcccggtc
gctgcgcaggtgcggaccgcgcagggcgcggccgagctggtcgctttccaccaggaggtg
ggcgcgagccgcgaccagttgccctacgacatcgatggggtggtgtacaaggtcaacagc
ctggcgctgcagcgccagctggggttcgtgacccgcgagccgcggtgggccgtggcgcac
aagtacccggcgcaggagatggtcacccgcgtggaggggatcgacgtgcaggtcggccgc
accggcaagctcacccccgtggcgcggctggctcccgtcttcgtgggcggcgtcaccgtc
accaacgccacgctgcacaacctgttcgagatccgcaagaagggcgtgcgcgtgggcgac
caggtcatcgtgcgccgcgcgggcgatgtgatccccgaagtggtgggcacggtgccaacg
gccctgctgcccgtggcgggtgcactgcagggctccgatgcgctggtggacgccgcatcc
ggggccgatggcacggcatccggggccgatgctgcgcgtgccgcaccgcggtcgccctac
gtgccgaacttccgcatgccccgccagtgtcccatctgcggcagcgcggtggtccgggag
aaaggcgaagccaaccaccgctgcaccggggggcttttctgcccggcccagcgcaaggag
gcgctgctccacttcgcccagcgccgggccatggacatcgaaggcctgggggaaaagctg
gtggaccagctggtggaaggccaggtcatccgcaccctgccggacctgtaccggctgggc
ctgacggcgctcagcagcctggaccgcatggcggagaaatccgcgcagaacgtgctggca
gccctggagaagtccaagcacaccacgctgccgcgcttcctgttcggcctgggcatccgc
catgtgggcgaagccacggccaaggaccttgcgcgccatttcggcggcctggacgccatc
atcggcgccagcgtggagcaactgctcgaggtgaacgacgtcggccccatcgtcgcggag
gccatccacaccttcttcgcacagcctcacaaccgcgaggtggtcgagcagttgagggcc
tgcggcgtcacctggaaggaaggcccgcccgccgagcgcaccaccttgccgctggccggg
aagacctttgttctcaccggcacgctgccgaccctgagccgtgaggacgccaaggagcgg
ctcgaagccgcgggcgcgaaggtcgcagggtcggtcagcaagaagacgcactacgtcgtg
gccggagaagaggccggcagcaagctcaccaaggcgcaggagttgggtgtgccggtcctg
gacgaggcgggcatgctcgccctcctgcagggcagctga
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