Candidatus Arthromitus sp. SFB-rat-Yit: RATSFB_1135
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Entry
RATSFB_1135 CDS
T01624
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
asb
Candidatus Arthromitus sp. SFB-rat-Yit
Pathway
asb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
asb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RATSFB_1135 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asb03400
]
RATSFB_1135 (nth)
Enzymes [BR:
asb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RATSFB_1135 (nth)
DNA repair and recombination proteins [BR:
asb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RATSFB_1135 (nth)
Prokaryotic type
RATSFB_1135 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
Ogg-HhH
EndIII_4Fe-2S
HHH_5
RecR_HhH
DUF2400
Motif
Other DBs
NCBI-ProteinID:
BAK81697
UniProt:
G2IEX3
LinkDB
All DBs
Position
complement(1304796..1305425)
Genome browser
AA seq
209 aa
AA seq
DB search
MRKKFKIIVDKLIESYPDAKCELEYESPFQLLIATVLSAQTTDKKVNEVTNSLFSEYPKL
EDFLNLDEEKLKDKIKCIGLYRTKSKNIINLCKILKEEFNGEVPKTRDELITLPGVGRKT
ANVVISNCFGVQAFAVDVHVFRVSNRIGIANSKTPEQTELELMKNIDESLWTICHHTIIF
HGRRCCTSRKPNCGECKIKEYCKYYKQNN
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagaagtttaagattatagtggataaattgattgaaagttaccctgatgctaag
tgtgaacttgaatatgaaagtccatttcaattacttatagctacagttttatctgctcaa
actacagataaaaaagtaaatgaggttacaaatagtttattttcagaatatcctaagcta
gaagattttttgaacttagatgaggaaaagcttaaagataagataaaatgtattgggtta
tatagaacgaagagtaaaaatatcataaatttatgtaagattttaaaagaagagtttaat
ggcgaggttccaaaaactagggatgaattaataactttacctggtgtaggtcgtaaaacg
gcaaatgttgttatatctaactgttttggggttcaggcttttgctgtagatgtacatgtg
tttagagtgtctaataggataggtatagctaattcaaaaacaccggagcaaacagagtta
gaacttatgaaaaatattgatgagagtttatggacaatttgtcaccatacaattattttt
catggtaggaggtgctgtacatcaagaaaacctaattgtggagaatgtaaaataaaagaa
tattgtaagtattacaaacaaaataattaa
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